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CBS51388_008959-T1, CBS51388_008959-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_008959-T1
Unique NameCBS51388_008959-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An14:1175861..1176692+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_008959-T1 ID=CBS51388_008959-T1|Name=CBS51388_008959-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=832bp|location=Sequence derived from alignment at An14:1175861..1176692+ (Aspergillus niger CBS 513.88)
ATGCCTCGTTCCAAGCGTGCCCGCGTCGTGCACGAGTCCAAGACCACCAA
AAAGTCCCACAAGGAACAGACCCGTCGCCTGTACGCTAACATCCGGGAAT
GCATTGAGAAGTACGACCACCTGTTCGTCTTCGGCGTGGACAACATGCGC
AACACCTATCTGAAGGATGTCCGTACCGAGTTCGCCGATAGCCGGTTAGT
CTTCTCTCTCCCCAGCAACCCCCGCCTATCCCCAAGATGCCCCTCCACTC
CAACAACCATGCATGCAAACTAACCACCTGAGCAGTCTCTTCTTCGGCAA
AACCAAGGTCATGGCCGTCGCTCTGGGCCACAACCCCGAAAACGAAGCCG
CGCCCAACCTCCACAAACTCAACCCCTACCTCACCGGCGCCGTCGGTCTC
CTCTTCACCTCCCGCGACCCTCAATCCGTGACCGACTACTTCGAGTCCTT
CCGGCCGCTTGACTTCGCCCGCTCCGGGACAGTTAGTACCCGGGCGTTCT
CGATCCCCAACGGCCAGGTGTATTCGCGGGCCGGAGAGATCCCCGTCTCC
GAGGACGAGCCGCTCAGCCATACCATTGAGCCGGAGTTGCGTAAACTCGG
TGTCCCGACTCGGTTGGTTAAGGGCAAGGTCATGCTGGAGTTGACGGAGG
GTCAGGAGGGATTCCCCGTTTGCAGGGAGGGAGAGGTGCTGGATTCGAGG
CAGACGACGTTGTTGAAGATGTTTGGGGTTGTTATGGCTGAGTTCCATGT
TGCGTTGAAGGCTCATTGGACGAGGGAGTCTGGGGAGGTGGAGATTCTGG
AGAAGGATGAGGCTGGTATGGAGGTTGAGTAA
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Coding sequence (CDS) from alignment at An14:1175861..1176692+

>CBS51388_008959-T1 ID=CBS51388_008959-T1|Name=CBS51388_008959-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1482bp|location=Sequence derived from alignment at An14:1175861..1176692+ (Aspergillus niger CBS 513.88)
ATGCCTCGTTCCAAGCGTGCCCGCGTCGTGCACGAGTCCAAGACCACCAA
AAAGTCCCACAAGGAACAGACCCGTCGCCTGTACGCTAACATCCGGGAAT
GCATTGAGAAGTACGACCACCTGTTCGTCTTCGGCGTGGACAACATGCGC
AACACCTATCTGAAGGATGTCCGTACCGAGTTCGCCGATAGCCGTCTCTT
CTTCGGCAAAACCAAGGTCATGGCCGTCGCTCTGGGCCACAACCCCGAAA
ACGAAGCCGCGCCCAACCTCCACAAACTCAACCCCTACCTCACCGGCGCC
GTCGGTCTCCTCTTCACCTCCCGCGACCCTCAATCCGTGACCGACTACTT
CGAGTCCTTCCGGCCGCTTGACTTCGCCCGCTCCGGGACAGTTAGTACCC
GGGCGTTCTCGATCCCCAACGGCCAGGTGTATTCGCGGGCCGGAGAGATC
CCCGTCTCCGAGGACGAGCCGCTCAGCCATACCATTGAGCCGGAGTTGCG
TAAACTCGGTGTCCCGACTCGGTTGGTTAAGGGCAAGGTCATGCTGGAGT
TGACGGAGGGTCAGGAGGGATTCCCCGTTTGCAGGGAGGGAGAGGTGCTG
GATTCGAGGCAGACGACGTTGTTGAAGATGTTTGGGGTTGTTATGGCTGA
GTTCCATGTTGCGTTGAAGGCTCATTGGACGAGGGAGTCTGGGGAGGTGG
AGATTCTGGAGAAGGATGAGGCTGGTATGGAGGTTGAGTAAATGCCTCGT
TCCAAGCGTGCCCGCGTCGTGCACGAGTCCAAGACCACCAAAAAGTCCCA
CAAGGAACAGACCCGTCGCCTGTACGCTAACATCCGGGAATGCATTGAGA
AGTACGACCACCTGTTCGTCTTCGGCGTGGACAACATGCGCAACACCTAT
CTGAAGGATGTCCGTACCGAGTTCGCCGATAGCCGTCTCTTCTTCGGCAA
AACCAAGGTCATGGCCGTCGCTCTGGGCCACAACCCCGAAAACGAAGCCG
CGCCCAACCTCCACAAACTCAACCCCTACCTCACCGGCGCCGTCGGTCTC
CTCTTCACCTCCCGCGACCCTCAATCCGTGACCGACTACTTCGAGTCCTT
CCGGCCGCTTGACTTCGCCCGCTCCGGGACAGTTAGTACCCGGGCGTTCT
CGATCCCCAACGGCCAGGTGTATTCGCGGGCCGGAGAGATCCCCGTCTCC
GAGGACGAGCCGCTCAGCCATACCATTGAGCCGGAGTTGCGTAAACTCGG
TGTCCCGACTCGGTTGGTTAAGGGCAAGGTCATGCTGGAGTTGACGGAGG
GTCAGGAGGGATTCCCCGTTTGCAGGGAGGGAGAGGTGCTGGATTCGAGG
CAGACGACGTTGTTGAAGATGTTTGGGGTTGTTATGGCTGAGTTCCATGT
TGCGTTGAAGGCTCATTGGACGAGGGAGTCTGGGGAGGTGGAGATTCTGG
AGAAGGATGAGGCTGGTATGGAGGTTGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000027ribosomal large subunit assembly
GO:0042254ribosome biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_008959CBS51388_008959Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_008959-T1.exon1CBS51388_008959-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_008959-T1.exon2CBS51388_008959-T1.exon2Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_008959-T1.cdsCBS51388_008959-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_008959-T1CBS51388_008959-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_14.5
NoteantiSMASH:Cluster_14.4
NoteBUSCO:EOG09264W46
DBxrefInterPro:IPR033867
DBxrefInterPro:IPR001790
DBxrefInterPro:IPR043141
DBxrefInterPro:IPR040637
DBxrefInterPro:IPR043164
DBxrefPFAM:PF17777
DBxrefPFAM:PF00466
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An14supercontigAn14:1175861..1176692 +
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