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CBS51388_009087-T1, CBS51388_009087-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_009087-T1
Unique NameCBS51388_009087-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An14:1557892..1558410-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_009087-T1 ID=CBS51388_009087-T1|Name=CBS51388_009087-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=519bp|location=Sequence derived from alignment at An14:1557892..1558410- (Aspergillus niger CBS 513.88)
ATGGCCGACACCGAGGATGCGGGCACATCGTCCGTCTCCGAACCCTTAGA TCTGGTGCGCCTGTCGCTCGATGAAATCGTCTTTGTCAAACTGCGCGGCG ATCGCGAGCTCAAGGGTCGTCTCCATGTGAGTCTTACGCCGACCTCCGAC TTCTGACTACGTGGCGTTTTACTGACATATGGTCTGTGGTAGGCATACGA TAGCCATTGCAACCTGGTGCTAGGAGATGTTGAGGAGACCATCTACGTGG TGGAGGAAGACGAGAACGAGCAAGAGACCCTCCGAGTACGTCGCTCTATC CATCTACCTCGGTTATAGTACAACCAGTTAGGGGGGAGGCTATATTAGTG CGGTGCTGGGCTAACGCAGAATGATCGTCTTTAGACCATCAAGAAGCAAG AAGAGATGCTCTTCGTTCGAGGTGCGTTTTGTGATGCCGTTCCCGGCAGA GCCCGGGGCTTGTCATACTGACCTTTCGTAATAGGAGACTCCGTCGTTCT GATTTCGCCTCAGGCATAA
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Coding sequence (CDS) from alignment at An14:1557892..1558410-

>CBS51388_009087-T1 ID=CBS51388_009087-T1|Name=CBS51388_009087-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1164bp|location=Sequence derived from alignment at An14:1557892..1558410- (Aspergillus niger CBS 513.88)
GAGACTCCGTCGTTCTGATTTCGCCTCAGGCATAAACCATCAAGAAGCAA
GAAGAGATGCTCTTCGTTCGAGGCATACGATAGCCATTGCAACCTGGTGC
TAGGAGATGTTGAGGAGACCATCTACGTGGTGGAGGAAGACGAGAACGAG
CAAGAGACCCTCCGAATGGCCGACACCGAGGATGCGGGCACATCGTCCGT
CTCCGAACCCTTAGATCTGGTGCGCCTGTCGCTCGATGAAATCGTCTTTG
TCAAACTGCGCGGCGATCGCGAGCTCAAGGGTCGTCTCCATGAGACTCCG
TCGTTCTGATTTCGCCTCAGGCATAAACCATCAAGAAGCAAGAAGAGATG
CTCTTCGTTCGAGGCATACGATAGCCATTGCAACCTGGTGCTAGGAGATG
TTGAGGAGACCATCTACGTGGTGGAGGAAGACGAGAACGAGCAAGAGACC
CTCCGAATGGCCGACACCGAGGATGCGGGCACATCGTCCGTCTCCGAACC
CTTAGATCTGGTGCGCCTGTCGCTCGATGAAATCGTCTTTGTCAAACTGC
GCGGCGATCGCGAGCTCAAGGGTCGTCTCCATGAGACTCCGTCGTTCTGA
TTTCGCCTCAGGCATAAACCATCAAGAAGCAAGAAGAGATGCTCTTCGTT
CGAGGCATACGATAGCCATTGCAACCTGGTGCTAGGAGATGTTGAGGAGA
CCATCTACGTGGTGGAGGAAGACGAGAACGAGCAAGAGACCCTCCGAATG
GCCGACACCGAGGATGCGGGCACATCGTCCGTCTCCGAACCCTTAGATCT
GGTGCGCCTGTCGCTCGATGAAATCGTCTTTGTCAAACTGCGCGGCGATC
GCGAGCTCAAGGGTCGTCTCCATGAGACTCCGTCGTTCTGATTTCGCCTC
AGGCATAAACCATCAAGAAGCAAGAAGAGATGCTCTTCGTTCGAGGCATA
CGATAGCCATTGCAACCTGGTGCTAGGAGATGTTGAGGAGACCATCTACG
TGGTGGAGGAAGACGAGAACGAGCAAGAGACCCTCCGAATGGCCGACACC
GAGGATGCGGGCACATCGTCCGTCTCCGAACCCTTAGATCTGGTGCGCCT
GTCGCTCGATGAAATCGTCTTTGTCAAACTGCGCGGCGATCGCGAGCTCA
AGGGTCGTCTCCAT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000956nuclear-transcribed mRNA catabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM3CBS51388_009087Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_009087-T1CBS51388_009087-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_009087-T1.cdsCBS51388_009087-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_009087-T1.exon4CBS51388_009087-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_009087-T1.exon3CBS51388_009087-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_009087-T1.exon2CBS51388_009087-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_009087-T1.exon1CBS51388_009087-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR034105
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductU4/U6-U5 snRNP complex subunit lsm3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An14supercontigAn14:1557892..1558410 -