You are here

Home

CBS51388_009225-T1, CBS51388_009225-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_009225-T1
Unique NameCBS51388_009225-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An15:206294..207485-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_009225-T1 ID=CBS51388_009225-T1|Name=CBS51388_009225-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1192bp|location=Sequence derived from alignment at An15:206294..207485- (Aspergillus niger CBS 513.88)
ATGGCTATCTCAGACCTACTGAATCGCCGTGTGCGAGCTGTCGCTCAGGA
CGACGAGGAGCTTTACTCTGACCAGTCTGGCTCGGATCAGGCGAGCGACG
ATCTCCGCTCTGACGAGTCAGGCTCAGAAAGTGGCAGTGATGGTTCCCTA
GACGAAGACGACGACGACGATGTGGTTAGTTTCCCCTCGTTTGGATAGAC
ATTGCAACATGCTGACTATCTCACAGTCTCAAGGCGACCCGGAAGATATG
GATGATGACGACGATGACGACGATGACGACGACGAAGATGACGAAGACGA
CAATGATGATGCCCAGGACGACGTTCAAGCCTCACTAAGCAGTATCTCGT
TCGGCGCATTGGCGAAAGCGCAAGCATCTATAGGACCCAAATCAAAGCGG
TCGTCCAAGGCCTCCCGGACAGAAGACGAGCCTGCCGCTCCTTCCCCCTT
AGACGACATTCGGGCGCGGATTCAAGAGGCACGCGAACAGAAACGCCAAG
CGCTGGCGAAAAATAAGGATTCGGAAAAGCTCTCTCGTTCCTCCAAGCAT
GCGCCGGCCGTACAATCCTCCAAACATGCCGTCTCCCGCAAACGGACCAT
CATTGAGCCGCCAAGTGTACCCAAGTCGCGAGACCCCCGTTTTGACCCGA
CTGTCCTGAGCCAGGGTGGTCGCGGAAACCCTCAAGGAACGAGCAACGCT
TACGCATTCTTGGACGAGTATCGCCGGGACGAACTGAAGCAGTTGAAGGA
ACAATACGCCAAGACGAAGAACCAAGAACAGAAAGAAGCTCTGAAGCGTA
CGATTCGGTCGACTCAAGACCGTCTTCGAGCGATGGAGAATAGGAAACGC
GAGAAGGAGATCTTAGCGGAGCATAAGAAGAAGGAGAAACAGCTCATCCG
CGAAGGAAAGAAGAGCAACCCGTACTTCTTGAAGAAGTCGGACCTGAAGA
AGCAGGTGCTGCTCAAGAAGTACGAGAATATGAACTCCAAGGACCGCACC
AAGGCACTCGAGAGGAAGCGCAAGAAGACTGCCGCCAAGGAAAGAAAGGA
GATGCCCATGGAGCGGAGAGCCTTGGCTGGCGACGATGCGCCGAGTGGCG
GTGGAAGGTGGCGGCTGGAAACGCCGCAGAGTTGCATAGATGTTGGGACT
TGCTGTCTGATTTCGGCGCCTGGCTCATGTTATTGTATATAG
back to top

Coding sequence (CDS) from alignment at An15:206294..207485-

>CBS51388_009225-T1 ID=CBS51388_009225-T1|Name=CBS51388_009225-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2280bp|location=Sequence derived from alignment at An15:206294..207485- (Aspergillus niger CBS 513.88)
TCTCAAGGCGACCCGGAAGATATGGATGATGACGACGATGACGACGATGA
CGACGACGAAGATGACGAAGACGACAATGATGATGCCCAGGACGACGTTC
AAGCCTCACTAAGCAGTATCTCGTTCGGCGCATTGGCGAAAGCGCAAGCA
TCTATAGGACCCAAATCAAAGCGGTCGTCCAAGGCCTCCCGGACAGAAGA
CGAGCCTGCCGCTCCTTCCCCCTTAGACGACATTCGGGCGCGGATTCAAG
AGGCACGCGAACAGAAACGCCAAGCGCTGGCGAAAAATAAGGATTCGGAA
AAGCTCTCTCGTTCCTCCAAGCATGCGCCGGCCGTACAATCCTCCAAACA
TGCCGTCTCCCGCAAACGGACCATCATTGAGCCGCCAAGTGTACCCAAGT
CGCGAGACCCCCGTTTTGACCCGACTGTCCTGAGCCAGGGTGGTCGCGGA
AACCCTCAAGGAACGAGCAACGCTTACGCATTCTTGGACGAGTATCGCCG
GGACGAACTGAAGCAGTTGAAGGAACAATACGCCAAGACGAAGAACCAAG
AACAGAAAGAAGCTCTGAAGCGTACGATTCGGTCGACTCAAGACCGTCTT
CGAGCGATGGAGAATAGGAAACGCGAGAAGGAGATCTTAGCGGAGCATAA
GAAGAAGGAGAAACAGCTCATCCGCGAAGGAAAGAAGAGCAACCCGTACT
TCTTGAAGAAGTCGGACCTGAAGAAGCAGGTGCTGCTCAAGAAGTACGAG
AATATGAACTCCAAGGACCGCACCAAGGCACTCGAGAGGAAGCGCAAGAA
GACTGCCGCCAAGGAAAGAAAGGAGATGCCCATGGAGCGGAGAGCCTTGG
CTGGCGACGATGCGCCGAGTGGCGGTGGAAGGTGGCGGCTGGAAACGCCG
CAGAGTTGCATAGATGTTGGGACTTGCTGTCTGATTTCGGCGCCTGGCTC
ATGTTATTGTATATAGATGGCTATCTCAGACCTACTGAATCGCCGTGTGC
GAGCTGTCGCTCAGGACGACGAGGAGCTTTACTCTGACCAGTCTGGCTCG
GATCAGGCGAGCGACGATCTCCGCTCTGACGAGTCAGGCTCAGAAAGTGG
CAGTGATGGTTCCCTAGACGAAGACGACGACGACGATGTGTCTCAAGGCG
ACCCGGAAGATATGGATGATGACGACGATGACGACGATGACGACGACGAA
GATGACGAAGACGACAATGATGATGCCCAGGACGACGTTCAAGCCTCACT
AAGCAGTATCTCGTTCGGCGCATTGGCGAAAGCGCAAGCATCTATAGGAC
CCAAATCAAAGCGGTCGTCCAAGGCCTCCCGGACAGAAGACGAGCCTGCC
GCTCCTTCCCCCTTAGACGACATTCGGGCGCGGATTCAAGAGGCACGCGA
ACAGAAACGCCAAGCGCTGGCGAAAAATAAGGATTCGGAAAAGCTCTCTC
GTTCCTCCAAGCATGCGCCGGCCGTACAATCCTCCAAACATGCCGTCTCC
CGCAAACGGACCATCATTGAGCCGCCAAGTGTACCCAAGTCGCGAGACCC
CCGTTTTGACCCGACTGTCCTGAGCCAGGGTGGTCGCGGAAACCCTCAAG
GAACGAGCAACGCTTACGCATTCTTGGACGAGTATCGCCGGGACGAACTG
AAGCAGTTGAAGGAACAATACGCCAAGACGAAGAACCAAGAACAGAAAGA
AGCTCTGAAGCGTACGATTCGGTCGACTCAAGACCGTCTTCGAGCGATGG
AGAATAGGAAACGCGAGAAGGAGATCTTAGCGGAGCATAAGAAGAAGGAG
AAACAGCTCATCCGCGAAGGAAAGAAGAGCAACCCGTACTTCTTGAAGAA
GTCGGACCTGAAGAAGCAGGTGCTGCTCAAGAAGTACGAGAATATGAACT
CCAAGGACCGCACCAAGGCACTCGAGAGGAAGCGCAAGAAGACTGCCGCC
AAGGAAAGAAAGGAGATGCCCATGGAGCGGAGAGCCTTGGCTGGCGACGA
TGCGCCGAGTGGCGGTGGAAGGTGGCGGCTGGAAACGCCGCAGAGTTGCA
TAGATGTTGGGACTTGCTGTCTGATTTCGGCGCCTGGCTCATGTTATTGT
ATATAGATGGCTATCTCAGACCTACTGAATCGCCGTGTGCGAGCTGTCGC
TCAGGACGACGAGGAGCTTTACTCTGACCAGTCTGGCTCGGATCAGGCGA
GCGACGATCTCCGCTCTGACGAGTCAGGCTCAGAAAGTGGCAGTGATGGT
TCCCTAGACGAAGACGACGACGACGATGTG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000469cleavage involved in rRNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RRP36CBS51388_009225Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_009225-T1CBS51388_009225-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_009225-T1.cdsCBS51388_009225-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_009225-T1.exon2CBS51388_009225-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_009225-T1.exon1CBS51388_009225-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
NoteBUSCO:EOG09265M98
DBxrefInterPro:IPR009292
DBxrefPFAM:PF06102
ProductrRNA bioproteinsis protein rrp36
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An15supercontigAn15:206294..207485 -
Powered by Drupal