You are here

Home

CBS51388_009577-T1, CBS51388_009577-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_009577-T1
Unique NameCBS51388_009577-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An15:1261383..1262523-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_009577-T1 ID=CBS51388_009577-T1|Name=CBS51388_009577-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1141bp|location=Sequence derived from alignment at An15:1261383..1262523- (Aspergillus niger CBS 513.88)
ATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCAC
CTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCA
CCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTT
AACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCAC
CAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAG
AATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACT
GGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGG
CAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCC
TTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACCCCCCTTATG
GCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAA
TAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATG
TTGGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAG
GATGACTGTCTTGCGGTTAACTCTGGCGAGGTAAGCAGCTCTGCATATAT
GCTTGATTCGTAATTATATTGATATTCTATAGAACATCTGGTTCACCGGC
GGCACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCGGCGACCG
CTCCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACCGTGAGCA
ATTCCGAAAACGCCGTCCGAATTAAGACCATCTCTGGCGCCACTGGCTCC
GTGTCCGAGATTACGTACTCCAACATCGTCATGTCTGGCATCTCCGATTA
CGGCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACGGGTAAGC
CGACGAACGGTGTCACTATTCAGGATGTTAAGCTGGAGAGCGTGACTGGT
AGCGTGGATAGTGGGGCTACTGAGATCTATCTTCTTTGCGGGTCTGGTAG
CTGCTCGGACTGGACCTGGGACGATGTGAAAGTTACCGGGGGGAAGAAGT
CCACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGTTAG
back to top

Coding sequence (CDS) from alignment at An15:1261383..1262523-

>CBS51388_009577-T1 ID=CBS51388_009577-T1|Name=CBS51388_009577-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2178bp|location=Sequence derived from alignment at An15:1261383..1262523- (Aspergillus niger CBS 513.88)
AACATCTGGTTCACCGGCGGCACCTGCATTGGCGGCCACGGTCTCTCCAT
CGGCTCTGTCGGCGACCGCTCCAACAACGTCGTCAAGAACGTCACCATCG
AACACTCCACCGTGAGCAATTCCGAAAACGCCGTCCGAATTAAGACCATC
TCTGGCGCCACTGGCTCCGTGTCCGAGATTACGTACTCCAACATCGTCAT
GTCTGGCATCTCCGATTACGGCGTGGTCATTCAGCAGGATTACGAAGACG
GCAAGCCTACGGGTAAGCCGACGAACGGTGTCACTATTCAGGATGTTAAG
CTGGAGAGCGTGACTGGTAGCGTGGATAGTGGGGCTACTGAGATCTATCT
TCTTTGCGGGTCTGGTAGCTGCTCGGACTGGACCTGGGACGATGTGAAAG
TTACCGGGGGGAAGAAGTCCACCGCTTGCAAGAACTTCCCTTCGGTGGCC
TCTTGTTAGATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGC
CGGCGCCACCTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCA
CGTTCACCACCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACT
ATCACCCTTAACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGAC
CGGTCTCACCAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCC
AGTACGAAGAATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATC
ACCGTCACTGGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTG
GTGGGATGGCAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACG
CCCATGGCCTTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACC
CCCCTTATGGCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGT
TACCATCAATAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATG
CGTTCGATGTTGGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTC
CATAACCAGGATGACTGTCTTGCGGTTAACTCTGGCGAGAACATCTGGTT
CACCGGCGGCACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCG
GCGACCGCTCCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACC
GTGAGCAATTCCGAAAACGCCGTCCGAATTAAGACCATCTCTGGCGCCAC
TGGCTCCGTGTCCGAGATTACGTACTCCAACATCGTCATGTCTGGCATCT
CCGATTACGGCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACG
GGTAAGCCGACGAACGGTGTCACTATTCAGGATGTTAAGCTGGAGAGCGT
GACTGGTAGCGTGGATAGTGGGGCTACTGAGATCTATCTTCTTTGCGGGT
CTGGTAGCTGCTCGGACTGGACCTGGGACGATGTGAAAGTTACCGGGGGG
AAGAAGTCCACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGTTAGAT
GCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCACCT
TCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCACC
GCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTTAA
CAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCACCA
GCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAGAA
TGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACTGG
TGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGGCA
AGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCCTT
GACTCCTCGTCTATTACTGGATTAAACATCAAAAACACCCCCCTTATGGC
GTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAATA
ATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATGTT
GGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAGGA
TGACTGTCTTGCGGTTAACTCTGGCGAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_009577CBS51388_009577Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_009577-T1CBS51388_009577-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_009577-T1.cdsCBS51388_009577-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_009577-T1.exon2CBS51388_009577-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_009577-T1.exon1CBS51388_009577-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
NoteSECRETED:SignalP(1-21)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An15supercontigAn15:1261383..1262523 -
Powered by Drupal