CBS51388_009891-T1, CBS51388_009891-T1 (mRNA) Aspergillus niger CBS 513.88

Overview


Name	CBS51388_009891-T1
Unique Name	CBS51388_009891-T1
Type	mRNA
Organism	Aspergillus niger CBS 513.88

Sequences

The following sequences are available for this feature:

mRNA from alignment at An16:269570..271670+
coding sequence from alignment at An16:269570..271670+

mRNA from alignment at An16:269570..271670+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>CBS51388_009891-T1 ID=CBS51388_009891-T1|Name=CBS51388_009891-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=2101bp|location=Sequence derived from alignment at An16:269570..271670+ (Aspergillus niger CBS 513.88)
ATGCAGAAAGCCTCCAGGAGGTCGACTCCCCGGTCGCGAATATCCAAGGC
TTGCGACCGTTGTCGTCGACAGAAGCTCAAGGTAGACTCCGACATTGGGG
ATAAGCTGGGAATAACCAACCGTGCACGATACTAATTGATTTCAGTGTGA
CTCAGTTCGTCCATGTGTTCTATGCACCCGTGCTGGCCACATATGCGAGA
CAACTACAGTATCACGTCGTCGTGTTTCCGAATACCAAACACCGGCCACT
CCAGTGGCTTCCGCCGGATCTGACACGCCGCAGGTCTTACCGCGCAGAGC
GTCCGAGGACCACCAACAATATGCAACGGGCACTTCAGCGATTGGTTTTG
CCAGACAAGTTTATAATGAAGAGGAGACAGGCCGGACCTTGACTGAAGCT
GCTGTGCCGGGTGATGTCGGCATGGCGGGTACTGATAACTCCCTCTGGGG
CCTCAAGGAGACATCCATGCCACCAAGGACTGTGATGCTAGCATTGATCA
ATGCCTACTTTGACCGAATGCAGTGGTTTATCTTGGTACTCCATGAGCCG
TCATTCAGAGAAATGGCCCAGCCAATTATCTCTCAACATCAATGGCAACG
CCAGGATCTTGGTGCAGTCATGACTGTGCTTGCCGTCGCTGTCATCAGCT
TACAATCTGTCCTGCCAGACGCAGATTGGCCTGGTCATATCCTCCTGGCT
AGGCATTCGATTGATGCCCAGGATTTGCTGAACAAATTTCTGGCCGAGAT
TCGTTCCCGTGTGCTTGACATGTTGGAGGACCGCCGTATCGAAGGAGTCC
AAGTCTGTCTCTTACTCTGTTGCTATTACATGTTCCACAGCTCCCCAAAC
ATGGCGTGGACCACGTGTGGTATGGCTTTCAGAGCTGCATATGCTCTGAA
CCTTCAAGAAACCAGTACATTGTCACAAACTTCTGTCGCTAATGAGACAC
GCTCTCGTTGTTGGAACCAGATCATCATCTCGGATACATTCTGTTCCATT
CTCTATGGACGTCCCGCTTCTCTGCCTTCTGCCAATGTTCGTCACCTACA
GCTCGTCGACGACCTGGCCATTGATCACTCGTTGCTAAATGATCTCTCGG
TGGACAATAGCGACGGACTAACGTCGCGCGCCCCATTTCACGTCTTGAAG
ACAGATGTGTATGCGATTGCTCGCGAAATTCTCATCCGATTCCGTCGGCT
TGACCTGACATCTGGAATAGACGAACAGGACTTGGAAGCTATCATTCGTA
TTACCGAAGAGTCCAACGTACTTCTCACTGACTGGTGGAAGTCCGTCCCG
AAACTGTATGACTTCGATTACTGGAAAGCAGACGGTCGATGGGAAATGAT
TGAAGGCCAGCTGCAAAGGCTTCCCTCCGAAGCAAGGCAACAGGTGGAGA
CAATATATCTACAGGCTGCTGTTCTCCAGTTGACGTACGACGGCATGGTC
ATCCAAGCAAATAGACCACTGTTGGAGCGAAGAATCAACAGGCTAACATC
TTCGCGGGCGATCGTGGATGCGATGCATAGGGCGCTTGACCGAGCCACTG
CTGCTGCTCTCCGCATATCCCGTGTTCCAGTTCACAAGCTGAAAAATCAT
TTTGCTATAGCAGTCGTATCGATGCAAGAGTTCACTGCTGGTGTGATTCT
CTGTATACCTCCCACGGTGAAGCCTTTAACGGCCACCGCTCATGAGGCGA
AGGACGGGGTGGTAAGAATAATACGCGCCAGTCGAAGTCTCAAGAGCCAC
GATCGAATAGCAAGGCAAACTGAACAACTTCTGACGGAACTACTCAAAGT
TACCACCCAACGCGAGATAACGCACGCCTTGGCCGATAATCTCGACACCA
ATTTCCCCTCCGATACGCGGCTAACAGGCTCCGTTGTTGCCGGCGCCTCA
AGTGACTCCTTGGGTGCAGGACGCTCCAGGCCAGTTCCCGGATCCGCAGC
GCAGGCAGTTGTAGATCCTATCCAAGGAGCCTGGGACTCAGAATTCAATG
CCCTCCCTGCCGTAACGGGACCTTATGATTTCCTCCCTGCTCAAGCCTTT
CAACAGCTGGACGATACATTTGGTGCCTTTGGAGAATGTAATATCCCTTG
A

Coding sequence (CDS) from alignment at An16:269570..271670+

>CBS51388_009891-T1 ID=CBS51388_009891-T1|Name=CBS51388_009891-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4074bp|location=Sequence derived from alignment at An16:269570..271670+ (Aspergillus niger CBS 513.88)
ATGCAGAAAGCCTCCAGGAGGTCGACTCCCCGGTCGCGAATATCCAAGGC
TTGCGACCGTTGTCGTCGACAGAAGCTCAAGTGTGACTCAGTTCGTCCAT
GTGTTCTATGCACCCGTGCTGGCCACATATGCGAGACAACTACAGTATCA
CGTCGTCGTGTTTCCGAATACCAAACACCGGCCACTCCAGTGGCTTCCGC
CGGATCTGACACGCCGCAGGTCTTACCGCGCAGAGCGTCCGAGGACCACC
AACAATATGCAACGGGCACTTCAGCGATTGGTTTTGCCAGACAAGTTTAT
AATGAAGAGGAGACAGGCCGGACCTTGACTGAAGCTGCTGTGCCGGGTGA
TGTCGGCATGGCGGGTACTGATAACTCCCTCTGGGGCCTCAAGGAGACAT
CCATGCCACCAAGGACTGTGATGCTAGCATTGATCAATGCCTACTTTGAC
CGAATGCAGTGGTTTATCTTGGTACTCCATGAGCCGTCATTCAGAGAAAT
GGCCCAGCCAATTATCTCTCAACATCAATGGCAACGCCAGGATCTTGGTG
CAGTCATGACTGTGCTTGCCGTCGCTGTCATCAGCTTACAATCTGTCCTG
CCAGACGCAGATTGGCCTGGTCATATCCTCCTGGCTAGGCATTCGATTGA
TGCCCAGGATTTGCTGAACAAATTTCTGGCCGAGATTCGTTCCCGTGTGC
TTGACATGTTGGAGGACCGCCGTATCGAAGGAGTCCAAGTCTGTCTCTTA
CTCTGTTGCTATTACATGTTCCACAGCTCCCCAAACATGGCGTGGACCAC
GTGTGGTATGGCTTTCAGAGCTGCATATGCTCTGAACCTTCAAGAAACCA
GTACATTGTCACAAACTTCTGTCGCTAATGAGACACGCTCTCGTTGTTGG
AACCAGATCATCATCTCGGATACATTCTGTTCCATTCTCTATGGACGTCC
CGCTTCTCTGCCTTCTGCCAATGTTCGTCACCTACAGCTCGTCGACGACC
TGGCCATTGATCACTCGTTGCTAAATGATCTCTCGGTGGACAATAGCGAC
GGACTAACGTCGCGCGCCCCATTTCACGTCTTGAAGACAGATGTGTATGC
GATTGCTCGCGAAATTCTCATCCGATTCCGTCGGCTTGACCTGACATCTG
GAATAGACGAACAGGACTTGGAAGCTATCATTCGTATTACCGAAGAGTCC
AACGTACTTCTCACTGACTGGTGGAAGTCCGTCCCGAAACTGTATGACTT
CGATTACTGGAAAGCAGACGGTCGATGGGAAATGATTGAAGGCCAGCTGC
AAAGGCTTCCCTCCGAAGCAAGGCAACAGGTGGAGACAATATATCTACAG
GCTGCTGTTCTCCAGTTGACGTACGACGGCATGGTCATCCAAGCAAATAG
ACCACTGTTGGAGCGAAGAATCAACAGGCTAACATCTTCGCGGGCGATCG
TGGATGCGATGCATAGGGCGCTTGACCGAGCCACTGCTGCTGCTCTCCGC
ATATCCCGTGTTCCAGTTCACAAGCTGAAAAATCATTTTGCTATAGCAGT
CGTATCGATGCAAGAGTTCACTGCTGGTGTGATTCTCTGTATACCTCCCA
CGGTGAAGCCTTTAACGGCCACCGCTCATGAGGCGAAGGACGGGGTGGTA
AGAATAATACGCGCCAGTCGAAGTCTCAAGAGCCACGATCGAATAGCAAG
GCAAACTGAACAACTTCTGACGGAACTACTCAAAGTTACCACCCAACGCG
AGATAACGCACGCCTTGGCCGATAATCTCGACACCAATTTCCCCTCCGAT
ACGCGGCTAACAGGCTCCGTTGTTGCCGGCGCCTCAAGTGACTCCTTGGG
TGCAGGACGCTCCAGGCCAGTTCCCGGATCCGCAGCGCAGGCAGTTGTAG
ATCCTATCCAAGGAGCCTGGGACTCAGAATTCAATGCCCTCCCTGCCGTA
ACGGGACCTTATGATTTCCTCCCTGCTCAAGCCTTTCAACAGCTGGACGA
TACATTTGGTGCCTTTGGAGAATGTAATATCCCTTGAATGCAGAAAGCCT
CCAGGAGGTCGACTCCCCGGTCGCGAATATCCAAGGCTTGCGACCGTTGT
CGTCGACAGAAGCTCAAGTGTGACTCAGTTCGTCCATGTGTTCTATGCAC
CCGTGCTGGCCACATATGCGAGACAACTACAGTATCACGTCGTCGTGTTT
CCGAATACCAAACACCGGCCACTCCAGTGGCTTCCGCCGGATCTGACACG
CCGCAGGTCTTACCGCGCAGAGCGTCCGAGGACCACCAACAATATGCAAC
GGGCACTTCAGCGATTGGTTTTGCCAGACAAGTTTATAATGAAGAGGAGA
CAGGCCGGACCTTGACTGAAGCTGCTGTGCCGGGTGATGTCGGCATGGCG
GGTACTGATAACTCCCTCTGGGGCCTCAAGGAGACATCCATGCCACCAAG
GACTGTGATGCTAGCATTGATCAATGCCTACTTTGACCGAATGCAGTGGT
TTATCTTGGTACTCCATGAGCCGTCATTCAGAGAAATGGCCCAGCCAATT
ATCTCTCAACATCAATGGCAACGCCAGGATCTTGGTGCAGTCATGACTGT
GCTTGCCGTCGCTGTCATCAGCTTACAATCTGTCCTGCCAGACGCAGATT
GGCCTGGTCATATCCTCCTGGCTAGGCATTCGATTGATGCCCAGGATTTG
CTGAACAAATTTCTGGCCGAGATTCGTTCCCGTGTGCTTGACATGTTGGA
GGACCGCCGTATCGAAGGAGTCCAAGTCTGTCTCTTACTCTGTTGCTATT
ACATGTTCCACAGCTCCCCAAACATGGCGTGGACCACGTGTGGTATGGCT
TTCAGAGCTGCATATGCTCTGAACCTTCAAGAAACCAGTACATTGTCACA
AACTTCTGTCGCTAATGAGACACGCTCTCGTTGTTGGAACCAGATCATCA
TCTCGGATACATTCTGTTCCATTCTCTATGGACGTCCCGCTTCTCTGCCT
TCTGCCAATGTTCGTCACCTACAGCTCGTCGACGACCTGGCCATTGATCA
CTCGTTGCTAAATGATCTCTCGGTGGACAATAGCGACGGACTAACGTCGC
GCGCCCCATTTCACGTCTTGAAGACAGATGTGTATGCGATTGCTCGCGAA
ATTCTCATCCGATTCCGTCGGCTTGACCTGACATCTGGAATAGACGAACA
GGACTTGGAAGCTATCATTCGTATTACCGAAGAGTCCAACGTACTTCTCA
CTGACTGGTGGAAGTCCGTCCCGAAACTGTATGACTTCGATTACTGGAAA
GCAGACGGTCGATGGGAAATGATTGAAGGCCAGCTGCAAAGGCTTCCCTC
CGAAGCAAGGCAACAGGTGGAGACAATATATCTACAGGCTGCTGTTCTCC
AGTTGACGTACGACGGCATGGTCATCCAAGCAAATAGACCACTGTTGGAG
CGAAGAATCAACAGGCTAACATCTTCGCGGGCGATCGTGGATGCGATGCA
TAGGGCGCTTGACCGAGCCACTGCTGCTGCTCTCCGCATATCCCGTGTTC
CAGTTCACAAGCTGAAAAATCATTTTGCTATAGCAGTCGTATCGATGCAA
GAGTTCACTGCTGGTGTGATTCTCTGTATACCTCCCACGGTGAAGCCTTT
AACGGCCACCGCTCATGAGGCGAAGGACGGGGTGGTAAGAATAATACGCG
CCAGTCGAAGTCTCAAGAGCCACGATCGAATAGCAAGGCAAACTGAACAA
CTTCTGACGGAACTACTCAAAGTTACCACCCAACGCGAGATAACGCACGC
CTTGGCCGATAATCTCGACACCAATTTCCCCTCCGATACGCGGCTAACAG
GCTCCGTTGTTGCCGGCGCCTCAAGTGACTCCTTGGGTGCAGGACGCTCC
AGGCCAGTTCCCGGATCCGCAGCGCAGGCAGTTGTAGATCCTATCCAAGG
AGCCTGGGACTCAGAATTCAATGCCCTCCCTGCCGTAACGGGACCTTATG
ATTTCCTCCCTGCTCAAGCCTTTCAACAGCTGGACGATACATTTGGTGCC
TTTGGAGAATGTAATATCCCTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0042025	host cell nucleus
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677	DNA binding
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006351	transcription, DNA-templated

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CBS51388_009891	CBS51388_009891	Aspergillus niger CBS 513.88	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CBS51388_009891-T1.exon1	CBS51388_009891-T1.exon1	Aspergillus niger CBS 513.88	exon
CBS51388_009891-T1.exon2	CBS51388_009891-T1.exon2	Aspergillus niger CBS 513.88	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CBS51388_009891-T1.cds	CBS51388_009891-T1.cds	Aspergillus niger CBS 513.88	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CBS51388_009891-T1	CBS51388_009891-T1-protein	Aspergillus niger CBS 513.88	polypeptide

Properties


Property Name	Value
DBxref	InterPro:IPR036864
DBxref	InterPro:IPR001138
DBxref	InterPro:IPR007219
DBxref	PFAM:PF00172
DBxref	PFAM:PF04082
Product	hypothetical protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Aspergillus niger CBS 513.88 whole genome analysis	2021-11-01

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
An16	supercontig	An16:269570..271670 +

Main menu

You are here

CBS51388_009891-T1, CBS51388_009891-T1 (mRNA) Aspergillus niger CBS 513.88

Main menu

User login

You are here

CBS51388_009891-T1, CBS51388_009891-T1 (mRNA) Aspergillus niger CBS 513.88