|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at An17:46252..47112- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_010508-T1 ID=CBS51388_010508-T1|Name=CBS51388_010508-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=861bp|location=Sequence derived from alignment at An17:46252..47112- (Aspergillus niger CBS 513.88)
ATGTCTGCCAATCGAGCAAGGCGTATCGCCAAAGAGATCGCCGACATCCA
CGCCGACACACAGTCGCAAATCACGGCTGAACCACTGCACGGTGGGGAGG
ATCTTACACATCTTCGAGGCACGTTCCCAGGGCCTCCAGGAACACCCTAT
GAAGGTGGAACCTATACCATCGACATTAAAATCCCCAACGATTATCCATT
TCGGCCTCCCCACATGAAGTTTGTAACCAAGGTCTGGCATCCCAACGTCA
GCAGTCAAACAGTAAGTCACCTCCAGTCATGTATGATCAGGCTGTCTCTA
GTTTCCTGCTAATAAAGCTGATTGCCCAGGGTGCCATCTGCCTAGACACT
CTTTCCACTGCGTGGTCGCCGGTGCTCACCATCAAGTCTGCCCTTCTGTC
ACTGCAATCCCTGCTAAGCACACCCGAGCCCAAAGATCCTCAAGATGCCG
AGGTCGCCACGATGCTCCTTCGGAGACCGCAGGAATTTGCACGAGTTGCT
CAGGAGTGGGCTGTGATGTATGCAGGAGCTCCCAGAAGGCATGCAGGTGA
AGGCAGCGGCGGTGTGACAGACGAAACTCTTCGACTGCAGGAGATCAAGT
CGAAAGAAGAACAGGAACAAGAGGACTTAAGCAAGTATGTACACGTTTGT
AGGACAAACCTAATCTTGGCTAATCTTTCTGTGCAGGTACGACGGCTACA
ACAAAGACTTGATCGACCGATTCTGTAACATGGGATTTGACGTCGAGCGC
GTTGTAGCCGCATTCAAATACTACGGCATTGATCGAATGGACGGAGAAGA
CTACGAGCTGGAGGAGGCGTACATGGGAGACATTACAGCGCGGCTCCTCG
GCGAGCCGTAG back to topCoding sequence (CDS) from alignment at An17:46252..47112- >CBS51388_010508-T1 ID=CBS51388_010508-T1|Name=CBS51388_010508-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2223bp|location=Sequence derived from alignment at An17:46252..47112- (Aspergillus niger CBS 513.88)
GTACGACGGCTACAACAAAGACTTGATCGACCGATTCTGTAACATGGGAT
TTGACGTCGAGCGCGTTGTAGCCGCATTCAAATACTACGGCATTGATCGA
ATGGACGGAGAAGACTACGAGCTGGAGGAGGCGTACATGGGAGACATTAC
AGCGCGGCTCCTCGGCGAGCCGTAGGGTGCCATCTGCCTAGACACTCTTT
CCACTGCGTGGTCGCCGGTGCTCACCATCAAGTCTGCCCTTCTGTCACTG
CAATCCCTGCTAAGCACACCCGAGCCCAAAGATCCTCAAGATGCCGAGGT
CGCCACGATGCTCCTTCGGAGACCGCAGGAATTTGCACGAGTTGCTCAGG
AGTGGGCTGTGATGTATGCAGGAGCTCCCAGAAGGCATGCAGGTGAAGGC
AGCGGCGGTGTGACAGACGAAACTCTTCGACTGCAGGAGATCAAGTCGAA
AGAAGAACAGGAACAAGAGGACTTAAGCAAATGTCTGCCAATCGAGCAAG
GCGTATCGCCAAAGAGATCGCCGACATCCACGCCGACACACAGTCGCAAA
TCACGGCTGAACCACTGCACGGTGGGGAGGATCTTACACATCTTCGAGGC
ACGTTCCCAGGGCCTCCAGGAACACCCTATGAAGGTGGAACCTATACCAT
CGACATTAAAATCCCCAACGATTATCCATTTCGGCCTCCCCACATGAAGT
TTGTAACCAAGGTCTGGCATCCCAACGTCAGCAGTCAAACAGTACGACGG
CTACAACAAAGACTTGATCGACCGATTCTGTAACATGGGATTTGACGTCG
AGCGCGTTGTAGCCGCATTCAAATACTACGGCATTGATCGAATGGACGGA
GAAGACTACGAGCTGGAGGAGGCGTACATGGGAGACATTACAGCGCGGCT
CCTCGGCGAGCCGTAGGGTGCCATCTGCCTAGACACTCTTTCCACTGCGT
GGTCGCCGGTGCTCACCATCAAGTCTGCCCTTCTGTCACTGCAATCCCTG
CTAAGCACACCCGAGCCCAAAGATCCTCAAGATGCCGAGGTCGCCACGAT
GCTCCTTCGGAGACCGCAGGAATTTGCACGAGTTGCTCAGGAGTGGGCTG
TGATGTATGCAGGAGCTCCCAGAAGGCATGCAGGTGAAGGCAGCGGCGGT
GTGACAGACGAAACTCTTCGACTGCAGGAGATCAAGTCGAAAGAAGAACA
GGAACAAGAGGACTTAAGCAAATGTCTGCCAATCGAGCAAGGCGTATCGC
CAAAGAGATCGCCGACATCCACGCCGACACACAGTCGCAAATCACGGCTG
AACCACTGCACGGTGGGGAGGATCTTACACATCTTCGAGGCACGTTCCCA
GGGCCTCCAGGAACACCCTATGAAGGTGGAACCTATACCATCGACATTAA
AATCCCCAACGATTATCCATTTCGGCCTCCCCACATGAAGTTTGTAACCA
AGGTCTGGCATCCCAACGTCAGCAGTCAAACAGTACGACGGCTACAACAA
AGACTTGATCGACCGATTCTGTAACATGGGATTTGACGTCGAGCGCGTTG
TAGCCGCATTCAAATACTACGGCATTGATCGAATGGACGGAGAAGACTAC
GAGCTGGAGGAGGCGTACATGGGAGACATTACAGCGCGGCTCCTCGGCGA
GCCGTAGGGTGCCATCTGCCTAGACACTCTTTCCACTGCGTGGTCGCCGG
TGCTCACCATCAAGTCTGCCCTTCTGTCACTGCAATCCCTGCTAAGCACA
CCCGAGCCCAAAGATCCTCAAGATGCCGAGGTCGCCACGATGCTCCTTCG
GAGACCGCAGGAATTTGCACGAGTTGCTCAGGAGTGGGCTGTGATGTATG
CAGGAGCTCCCAGAAGGCATGCAGGTGAAGGCAGCGGCGGTGTGACAGAC
GAAACTCTTCGACTGCAGGAGATCAAGTCGAAAGAAGAACAGGAACAAGA
GGACTTAAGCAAATGTCTGCCAATCGAGCAAGGCGTATCGCCAAAGAGAT
CGCCGACATCCACGCCGACACACAGTCGCAAATCACGGCTGAACCACTGC
ACGGTGGGGAGGATCTTACACATCTTCGAGGCACGTTCCCAGGGCCTCCA
GGAACACCCTATGAAGGTGGAACCTATACCATCGACATTAAAATCCCCAA
CGATTATCCATTTCGGCCTCCCCACATGAAGTTTGTAACCAAGGTCTGGC
ATCCCAACGTCAGCAGTCAAACA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009060 |
| DBxref | InterPro:IPR023313 |
| DBxref | InterPro:IPR015368 |
| DBxref | InterPro:IPR000608 |
| DBxref | InterPro:IPR016135 |
| DBxref | PFAM:PF00179 |
| DBxref | PFAM:PF09288 |
| Product | Ubiquitin-conjugating enzyme E2 1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An17 | supercontig | An17:46252..47112 - |
|
