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Sequences
The following sequences are available for this feature:
mRNA from alignment at An17:186695..188431- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_010553-T1 ID=CBS51388_010553-T1|Name=CBS51388_010553-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1737bp|location=Sequence derived from alignment at An17:186695..188431- (Aspergillus niger CBS 513.88)
ATGACCGAACCCTCCAGGAAGCGTTCCCGTGTCGCCTGCACACTATGCCA
ATCGCGCAAGCGCAAATGCTCCGGCGACCAGCCATGCACAACATGCGCCC
AGTTCGGCTCCGACTGCCACTATGACCTCCAATCACGCAGGAAGCGCGAT
GCCAGGCTATTCCAACTGCAGTCCGCCGCTTCTGCAGAATCCCCAGTGGC
CCCGGATGCAGCGCATCCTCCGCGCCACGAGCACAAGATCTCCCCGGAGG
AGACAGCAGCCCGACTCAGCTCGCTAGATGCCAACTCCGGCGCAGCATTC
GCCAGACGACTCGGCCTCAAGGTCGATCCCACCAATGCGCCCAAGATGCA
TCTATTCGCATGGAACGTCGGCGCGCGTCATCTTCCACCTCCATCAATGC
CACCATCATCCGCCCCCAAAGCAGTCCCTATCACGGATACCATCTCGCAG
GACGAGATGCGCTCCCTCGTAGCCATCTTCTTCGACAAAGTCGACCCATG
CTACCCTTTCGTCGACCGCGACACCCTCCTTCGCCAAGTCAGCAGACGCT
GGCTTCCACCCACAGCCGAGTCCGCTCTCCTCTACAGCCCCTACGACGCC
GTCCTCAGCGGCGTCGCAGCATTTGGCTACCTCTTCTCCCGCAGACAATC
CAGCTCCACAGAGCTCCAACTCGCCGAAACAGCCCGGCTCATCCTCGAAC
AAACCCTACTATCAGACACTACTCCCACTCTCGACACCGTAACAGCCTGG
GTCCTCCGCGTCGCCTACCTCCGCCTGACCTCCACCCCGAACCTCGCCTG
GACAGCCAGCTGCACCCTAATGCACCTCATCGAAGCTACAGGCCTGCACC
TCGAACAGCCCTCCTCCGACGCCATCAACCAGCTCCCCACCCCAGTCGAC
CCGGACCTCCGCCGGCGTCTCTTCGGCATGGCCCGCCACCTCAACGTTTG
GATCTCCTTTGAACTCGCCCGCTCCCGGGTCGTCCTCCACGGCGCAACCT
CCCTGCCCCCAACACCGCGCGTCCCAGGTACCCCAGAAATCTTCACCCTC
CTACCCATGTCCGAAAGCCTCGACCCAAACACAATCAAAACCCCCGACCC
TCCAGAACTCGAATCCGCGCTGCGCAACGTCCTTGACCAATCCCACGTCT
TACCCCAATTAATCCTCGTGCAATGTAACCTCATGCTCTGCATCTACCGG
CGCCTGCGCGCCCTGAACTGCATTATCTCCGGGGACTTACTGGACCGCGT
ACTGGCACTCTCCGTGAAGGGACTCCAGGCAGCGAGGGAGATGGTCGCGA
CGACCTGTCCGTGGCATCAGATCGCGAATGTGCCGTTCCAGGTTGTGTGC
ACGCTCCTGGCGATAGACAATCGGGCGTCGTTGGTCATGTTGGGGGGTGC
GATGCGCACGCTGCGTGAGGTGGCGGCCGCGTATGATACGGAGGTGATGC
GCGAGGCGTATAGTACGGCGTATTTGCTGATTCTATTGCACCAACGCAGG
AAGGAGGAGGATACGAAGGCGTTGAAGGATGTGTTGAGGGTTAATTCGGG
GGCGTCGGCCGAGCAGTTTGAGATGGGACAGGAGGTTAGCCCTGCTGCTG
ATGGCGGTGGTGGTTCTATGGAGCCGCATCATTCGCTGGCTGATTATCCG
GGGTTCTCGTGGTTGAGTGATCTGCTGATTGATATTCCTAGTTTGGGCAG
TTTCGATATGGAGCGGTTTATGTACACTGATGTATAA back to topCoding sequence (CDS) from alignment at An17:186695..188431- >CBS51388_010553-T1 ID=CBS51388_010553-T1|Name=CBS51388_010553-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1737bp|location=Sequence derived from alignment at An17:186695..188431- (Aspergillus niger CBS 513.88)
ATGACCGAACCCTCCAGGAAGCGTTCCCGTGTCGCCTGCACACTATGCCA
ATCGCGCAAGCGCAAATGCTCCGGCGACCAGCCATGCACAACATGCGCCC
AGTTCGGCTCCGACTGCCACTATGACCTCCAATCACGCAGGAAGCGCGAT
GCCAGGCTATTCCAACTGCAGTCCGCCGCTTCTGCAGAATCCCCAGTGGC
CCCGGATGCAGCGCATCCTCCGCGCCACGAGCACAAGATCTCCCCGGAGG
AGACAGCAGCCCGACTCAGCTCGCTAGATGCCAACTCCGGCGCAGCATTC
GCCAGACGACTCGGCCTCAAGGTCGATCCCACCAATGCGCCCAAGATGCA
TCTATTCGCATGGAACGTCGGCGCGCGTCATCTTCCACCTCCATCAATGC
CACCATCATCCGCCCCCAAAGCAGTCCCTATCACGGATACCATCTCGCAG
GACGAGATGCGCTCCCTCGTAGCCATCTTCTTCGACAAAGTCGACCCATG
CTACCCTTTCGTCGACCGCGACACCCTCCTTCGCCAAGTCAGCAGACGCT
GGCTTCCACCCACAGCCGAGTCCGCTCTCCTCTACAGCCCCTACGACGCC
GTCCTCAGCGGCGTCGCAGCATTTGGCTACCTCTTCTCCCGCAGACAATC
CAGCTCCACAGAGCTCCAACTCGCCGAAACAGCCCGGCTCATCCTCGAAC
AAACCCTACTATCAGACACTACTCCCACTCTCGACACCGTAACAGCCTGG
GTCCTCCGCGTCGCCTACCTCCGCCTGACCTCCACCCCGAACCTCGCCTG
GACAGCCAGCTGCACCCTAATGCACCTCATCGAAGCTACAGGCCTGCACC
TCGAACAGCCCTCCTCCGACGCCATCAACCAGCTCCCCACCCCAGTCGAC
CCGGACCTCCGCCGGCGTCTCTTCGGCATGGCCCGCCACCTCAACGTTTG
GATCTCCTTTGAACTCGCCCGCTCCCGGGTCGTCCTCCACGGCGCAACCT
CCCTGCCCCCAACACCGCGCGTCCCAGGTACCCCAGAAATCTTCACCCTC
CTACCCATGTCCGAAAGCCTCGACCCAAACACAATCAAAACCCCCGACCC
TCCAGAACTCGAATCCGCGCTGCGCAACGTCCTTGACCAATCCCACGTCT
TACCCCAATTAATCCTCGTGCAATGTAACCTCATGCTCTGCATCTACCGG
CGCCTGCGCGCCCTGAACTGCATTATCTCCGGGGACTTACTGGACCGCGT
ACTGGCACTCTCCGTGAAGGGACTCCAGGCAGCGAGGGAGATGGTCGCGA
CGACCTGTCCGTGGCATCAGATCGCGAATGTGCCGTTCCAGGTTGTGTGC
ACGCTCCTGGCGATAGACAATCGGGCGTCGTTGGTCATGTTGGGGGGTGC
GATGCGCACGCTGCGTGAGGTGGCGGCCGCGTATGATACGGAGGTGATGC
GCGAGGCGTATAGTACGGCGTATTTGCTGATTCTATTGCACCAACGCAGG
AAGGAGGAGGATACGAAGGCGTTGAAGGATGTGTTGAGGGTTAATTCGGG
GGCGTCGGCCGAGCAGTTTGAGATGGGACAGGAGGTTAGCCCTGCTGCTG
ATGGCGGTGGTGGTTCTATGGAGCCGCATCATTCGCTGGCTGATTATCCG
GGGTTCTCGTGGTTGAGTGATCTGCTGATTGATATTCCTAGTTTGGGCAG
TTTCGATATGGAGCGGTTTATGTACACTGATGTATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An17 | supercontig | An17:186695..188431 - |
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