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Sequences
The following sequences are available for this feature:
mRNA from alignment at An17:214669..215303+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_010563-T1 ID=CBS51388_010563-T1|Name=CBS51388_010563-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=635bp|location=Sequence derived from alignment at An17:214669..215303+ (Aspergillus niger CBS 513.88)
ATGTCCTTCTACGTCGCCCCCAGCCAGCAGCGCACTCTCCGCGCCTGCAT
GGTGTGCTCGCTCGTTCAACTGCACAGCGTACGTTCAGCTGCTACCTCCC
AATTAAAACCAACCCAACCTAACCCGAACAACAACTAACATTTTCTCCTT
TCTTACTGCTTAGAAATTCATGCGCGAAGGCTGTCCCAACTGCGACAATG
TCCTCGGCCTCCGCGGCAACAACGACGCGATCCAAGAATGCACGTCGCAG
GTCTTCGAGGGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGGTGGC
TAGGTGGCAGAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTTAAGG
TTACGGGATCGGTGAGTACTCTCGCCCACCCATACTGAACTTCAATTATG
TCCGGGGGTGGTGGTGAAGAGAATATTGGGCTAACGGTGATGGGTGAACA
GCTTCCCGATGAGATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTATA
TTCCGTATGTTGCCCTTCTATTCCTTCTTTGCATGTCTTTGCGTTGTGTG
TTGCGTGTTGGATTAATTGATGAGTGCTGATTATTATGTGTCTCGATACA
GGAGGGATGGTAGCACGGGTGAAGAGGAGGCGTGA back to topCoding sequence (CDS) from alignment at An17:214669..215303+ >CBS51388_010563-T1 ID=CBS51388_010563-T1|Name=CBS51388_010563-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1452bp|location=Sequence derived from alignment at An17:214669..215303+ (Aspergillus niger CBS 513.88)
ATGTCCTTCTACGTCGCCCCCAGCCAGCAGCGCACTCTCCGCGCCTGCAT
GGTGTGCTCGCTCGTTCAACTGCACAGCAAATTCATGCGCGAAGGCTGTC
CCAACTGCGACAATGTCCTCGGCCTCCGCGGCAACAACGACGCGATCCAA
GAATGCACGTCGCAGGTCTTCGAGGGCCTGGTGACGCTCCGCGATCCCAC
AACGAGCTGGGTGGCTAGGTGGCAGAGATTGGATAGTTATGTGCCGGGGA
CGTATGCGGTTAAGGTTACGGGATCGCTTCCCGATGAGATTATTTCCAGT
TTGGAGGATTCGGGTGTCAAGTATATTCCGAGGGATGGTAGCACGGGTGA
AGAGGAGGCGTGAATGTCCTTCTACGTCGCCCCCAGCCAGCAGCGCACTC
TCCGCGCCTGCATGGTGTGCTCGCTCGTTCAACTGCACAGCAAATTCATG
CGCGAAGGCTGTCCCAACTGCGACAATGTCCTCGGCCTCCGCGGCAACAA
CGACGCGATCCAAGAATGCACGTCGCAGGTCTTCGAGGGCCTGGTGACGC
TCCGCGATCCCACAACGAGCTGGGTGGCTAGGTGGCAGAGATTGGATAGT
TATGTGCCGGGGACGTATGCGGTTAAGGTTACGGGATCGCTTCCCGATGA
GATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTATATTCCGAGGGATG
GTAGCACGGGTGAAGAGGAGGCGTGAATGTCCTTCTACGTCGCCCCCAGC
CAGCAGCGCACTCTCCGCGCCTGCATGGTGTGCTCGCTCGTTCAACTGCA
CAGCAAATTCATGCGCGAAGGCTGTCCCAACTGCGACAATGTCCTCGGCC
TCCGCGGCAACAACGACGCGATCCAAGAATGCACGTCGCAGGTCTTCGAG
GGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGGTGGCTAGGTGGCA
GAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTTAAGGTTACGGGAT
CGCTTCCCGATGAGATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTAT
ATTCCGAGGGATGGTAGCACGGGTGAAGAGGAGGCGTGAATGTCCTTCTA
CGTCGCCCCCAGCCAGCAGCGCACTCTCCGCGCCTGCATGGTGTGCTCGC
TCGTTCAACTGCACAGCAAATTCATGCGCGAAGGCTGTCCCAACTGCGAC
AATGTCCTCGGCCTCCGCGGCAACAACGACGCGATCCAAGAATGCACGTC
GCAGGTCTTCGAGGGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGG
TGGCTAGGTGGCAGAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTT
AAGGTTACGGGATCGCTTCCCGATGAGATTATTTCCAGTTTGGAGGATTC
GGGTGTCAAGTATATTCCGAGGGATGGTAGCACGGGTGAAGAGGAGGCGT
GA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0032786 | positive regulation of DNA-templated transcription, elongation |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265BBJ |
| DBxref | InterPro:IPR029040 |
| DBxref | InterPro:IPR038510 |
| DBxref | InterPro:IPR009287 |
| DBxref | InterPro:IPR022800 |
| DBxref | PFAM:PF06093 |
| Product | transcription elongation factor spt4 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An17 | supercontig | An17:214669..215303 + |
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