You are here

Home

CBS51388_010654-T1, CBS51388_010654-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_010654-T1
Unique NameCBS51388_010654-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An17:528368..529788-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_010654-T1 ID=CBS51388_010654-T1|Name=CBS51388_010654-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1421bp|location=Sequence derived from alignment at An17:528368..529788- (Aspergillus niger CBS 513.88)
ATGGCTGCGGAACTTACTTCAACTCGGCTCAATGCGGAGAACCATCTGCT
CTTGGTATTGAACTCTTCGCCCCCTACCTATTGCTGGCTTGCACCCCATT
CTGATACTAATTCTGTCGACTACTTGCAGGACCAACCTCTCCTGCGCTTA
CCACATGAGCTTGCACGTCGGAACTTCAAGTCTGTTCAGCGCCTCGTCGA
GCGAGAAAAGGAGTACGTCCTCCCCGCACTCAAGGAGACCGCCAATGCAT
CCTTATCAAATGAGCAAACGCCTGACCAAGCTCTTGCTGCGCTCGATGCT
ATGATTTCCCGCATGCAAGGCTTGAAACGGAAAATGGAGAATCTACATCA
GGAGGAAAGAAAAATTCAAGAGCAGTCCCGGAAGCGTATCCAGCACCTAG
AGAAACTTCACCAGATTCCTAGCTTGGCAGACGTCCAATACGATCAGTGG
GCGAGGGTCCGTTTGGACAGGCTCATGATAGATCATATGTTACGTTCCGG
ATATATCAAAAGTGCCCAGCAATTAGCTCGTGAAAAGGGGATCGAGGATC
TTGTAGATCTCAACGTTTTCGTTCAGTGTCAACGGATTGCCGAGAGTCTA
CGCACTGGTGAAACGAAGGATGCCCTGCAATGGTGTGGCGAGAATAAAGC
AGCGCTGAAGAAGAGTCAGGTTTGTCTAACATCCAACAATGATCACGGAG
CTATATGCCAGAGTCCAATTCTAACCCAAAATTACAGTATAATCTGGAAT
TCGAACTCCGATTGCAGCAATACATTGAAATGGTCAGGGCGGGGCATAAA
GAGAGATTCAACGACGCTATGATCCACGCCAAAAGATATCTAGCGCCTTA
TCTTGAGACACAGTCGGTGGAGATTCATCGAGCTGCAGGACTCCTCGCTT
TTCCTCCGGACACCAAAGCTGAGCCGTACAAGGTAATGGGGATATTGAAC
ACACTCTCAGGAAAACTGTACAAACTAACTCACCCCTAGTCGATGTATGC
TCACGAGCGATGGGCCTATCTTTCCGACCTCTTTGTCCGCACTCACCATG
AGCTTTTGTCACTATCTTCTCGTCCTTTGTTACACATCGCTCTGTCTGCG
GGATTGTCGGCTCTCAAAACTCCTTCGTGCCATTCGGCCTATACCTCCTC
CAGTTCGAATTCGTTGTCCACAACAACATCTGTTTGTCCAATTTGTTCGA
CCGAGCTTAACGAGCTCGCACGTAACATGCCATATGCTCACCACACGAAG
AGCTACGTTGAGAACGACCCGATTGTGCTCCCAAATGGCAGGATTTACGG
CCAGCAACGGCTGTTGGAGATGAGCAAGAAAGTCGGTTGTGTTGAGGTTG
GTAAAGTAAAGGACCCTACGACAGGTGAAGTATTCAACGAGGGTGATATG
AAGAAAGTCTACATCATGTAA
back to top

Coding sequence (CDS) from alignment at An17:528368..529788-

>CBS51388_010654-T1 ID=CBS51388_010654-T1|Name=CBS51388_010654-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3888bp|location=Sequence derived from alignment at An17:528368..529788- (Aspergillus niger CBS 513.88)
TCGATGTATGCTCACGAGCGATGGGCCTATCTTTCCGACCTCTTTGTCCG
CACTCACCATGAGCTTTTGTCACTATCTTCTCGTCCTTTGTTACACATCG
CTCTGTCTGCGGGATTGTCGGCTCTCAAAACTCCTTCGTGCCATTCGGCC
TATACCTCCTCCAGTTCGAATTCGTTGTCCACAACAACATCTGTTTGTCC
AATTTGTTCGACCGAGCTTAACGAGCTCGCACGTAACATGCCATATGCTC
ACCACACGAAGAGCTACGTTGAGAACGACCCGATTGTGCTCCCAAATGGC
AGGATTTACGGCCAGCAACGGCTGTTGGAGATGAGCAAGAAAGTCGGTTG
TGTTGAGGTTGGTAAAGTAAAGGACCCTACGACAGGTGAAGTATTCAACG
AGGGTGATATGAAGAAAGTCTACATCATGTAATATAATCTGGAATTCGAA
CTCCGATTGCAGCAATACATTGAAATGGTCAGGGCGGGGCATAAAGAGAG
ATTCAACGACGCTATGATCCACGCCAAAAGATATCTAGCGCCTTATCTTG
AGACACAGTCGGTGGAGATTCATCGAGCTGCAGGACTCCTCGCTTTTCCT
CCGGACACCAAAGCTGAGCCGTACAAGATGGCTGCGGAACTTACTTCAAC
TCGGCTCAATGCGGAGAACCATCTGCTCTTGGTATTGAACTCTTCGCCCC
CTACCTATTGCTGGCTTGCACCCCATTCTGATACTAATTCTGTCGACTAC
TTGCAGGACCAACCTCTCCTGCGCTTACCACATGAGCTTGCACGTCGGAA
CTTCAAGTCTGTTCAGCGCCTCGTCGAGCGAGAAAAGGAGTACGTCCTCC
CCGCACTCAAGGAGACCGCCAATGCATCCTTATCAAATGAGCAAACGCCT
GACCAAGCTCTTGCTGCGCTCGATGCTATGATTTCCCGCATGCAAGGCTT
GAAACGGAAAATGGAGAATCTACATCAGGAGGAAAGAAAAATTCAAGAGC
AGTCCCGGAAGCGTATCCAGCACCTAGAGAAACTTCACCAGATTCCTAGC
TTGGCAGACGTCCAATACGATCAGTGGGCGAGGGTCCGTTTGGACAGGCT
CATGATAGATCATATGTTACGTTCCGGATATATCAAAAGTGCCCAGCAAT
TAGCTCGTGAAAAGGGGATCGAGGATCTTGTAGATCTCAACGTTTTCGTT
CAGTGTCAACGGATTGCCGAGAGTCTACGCACTGGTGAAACGAAGGATGC
CCTGCAATGGTGTGGCGAGAATAAAGCAGCGCTGAAGAAGAGTCAGTCGA
TGTATGCTCACGAGCGATGGGCCTATCTTTCCGACCTCTTTGTCCGCACT
CACCATGAGCTTTTGTCACTATCTTCTCGTCCTTTGTTACACATCGCTCT
GTCTGCGGGATTGTCGGCTCTCAAAACTCCTTCGTGCCATTCGGCCTATA
CCTCCTCCAGTTCGAATTCGTTGTCCACAACAACATCTGTTTGTCCAATT
TGTTCGACCGAGCTTAACGAGCTCGCACGTAACATGCCATATGCTCACCA
CACGAAGAGCTACGTTGAGAACGACCCGATTGTGCTCCCAAATGGCAGGA
TTTACGGCCAGCAACGGCTGTTGGAGATGAGCAAGAAAGTCGGTTGTGTT
GAGGTTGGTAAAGTAAAGGACCCTACGACAGGTGAAGTATTCAACGAGGG
TGATATGAAGAAAGTCTACATCATGTAATATAATCTGGAATTCGAACTCC
GATTGCAGCAATACATTGAAATGGTCAGGGCGGGGCATAAAGAGAGATTC
AACGACGCTATGATCCACGCCAAAAGATATCTAGCGCCTTATCTTGAGAC
ACAGTCGGTGGAGATTCATCGAGCTGCAGGACTCCTCGCTTTTCCTCCGG
ACACCAAAGCTGAGCCGTACAAGATGGCTGCGGAACTTACTTCAACTCGG
CTCAATGCGGAGAACCATCTGCTCTTGGTATTGAACTCTTCGCCCCCTAC
CTATTGCTGGCTTGCACCCCATTCTGATACTAATTCTGTCGACTACTTGC
AGGACCAACCTCTCCTGCGCTTACCACATGAGCTTGCACGTCGGAACTTC
AAGTCTGTTCAGCGCCTCGTCGAGCGAGAAAAGGAGTACGTCCTCCCCGC
ACTCAAGGAGACCGCCAATGCATCCTTATCAAATGAGCAAACGCCTGACC
AAGCTCTTGCTGCGCTCGATGCTATGATTTCCCGCATGCAAGGCTTGAAA
CGGAAAATGGAGAATCTACATCAGGAGGAAAGAAAAATTCAAGAGCAGTC
CCGGAAGCGTATCCAGCACCTAGAGAAACTTCACCAGATTCCTAGCTTGG
CAGACGTCCAATACGATCAGTGGGCGAGGGTCCGTTTGGACAGGCTCATG
ATAGATCATATGTTACGTTCCGGATATATCAAAAGTGCCCAGCAATTAGC
TCGTGAAAAGGGGATCGAGGATCTTGTAGATCTCAACGTTTTCGTTCAGT
GTCAACGGATTGCCGAGAGTCTACGCACTGGTGAAACGAAGGATGCCCTG
CAATGGTGTGGCGAGAATAAAGCAGCGCTGAAGAAGAGTCAGTCGATGTA
TGCTCACGAGCGATGGGCCTATCTTTCCGACCTCTTTGTCCGCACTCACC
ATGAGCTTTTGTCACTATCTTCTCGTCCTTTGTTACACATCGCTCTGTCT
GCGGGATTGTCGGCTCTCAAAACTCCTTCGTGCCATTCGGCCTATACCTC
CTCCAGTTCGAATTCGTTGTCCACAACAACATCTGTTTGTCCAATTTGTT
CGACCGAGCTTAACGAGCTCGCACGTAACATGCCATATGCTCACCACACG
AAGAGCTACGTTGAGAACGACCCGATTGTGCTCCCAAATGGCAGGATTTA
CGGCCAGCAACGGCTGTTGGAGATGAGCAAGAAAGTCGGTTGTGTTGAGG
TTGGTAAAGTAAAGGACCCTACGACAGGTGAAGTATTCAACGAGGGTGAT
ATGAAGAAAGTCTACATCATGTAATATAATCTGGAATTCGAACTCCGATT
GCAGCAATACATTGAAATGGTCAGGGCGGGGCATAAAGAGAGATTCAACG
ACGCTATGATCCACGCCAAAAGATATCTAGCGCCTTATCTTGAGACACAG
TCGGTGGAGATTCATCGAGCTGCAGGACTCCTCGCTTTTCCTCCGGACAC
CAAAGCTGAGCCGTACAAGATGGCTGCGGAACTTACTTCAACTCGGCTCA
ATGCGGAGAACCATCTGCTCTTGGTATTGAACTCTTCGCCCCCTACCTAT
TGCTGGCTTGCACCCCATTCTGATACTAATTCTGTCGACTACTTGCAGGA
CCAACCTCTCCTGCGCTTACCACATGAGCTTGCACGTCGGAACTTCAAGT
CTGTTCAGCGCCTCGTCGAGCGAGAAAAGGAGTACGTCCTCCCCGCACTC
AAGGAGACCGCCAATGCATCCTTATCAAATGAGCAAACGCCTGACCAAGC
TCTTGCTGCGCTCGATGCTATGATTTCCCGCATGCAAGGCTTGAAACGGA
AAATGGAGAATCTACATCAGGAGGAAAGAAAAATTCAAGAGCAGTCCCGG
AAGCGTATCCAGCACCTAGAGAAACTTCACCAGATTCCTAGCTTGGCAGA
CGTCCAATACGATCAGTGGGCGAGGGTCCGTTTGGACAGGCTCATGATAG
ATCATATGTTACGTTCCGGATATATCAAAAGTGCCCAGCAATTAGCTCGT
GAAAAGGGGATCGAGGATCTTGTAGATCTCAACGTTTTCGTTCAGTGTCA
ACGGATTGCCGAGAGTCTACGCACTGGTGAAACGAAGGATGCCCTGCAAT
GGTGTGGCGAGAATAAAGCAGCGCTGAAGAAGAGTCAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
FYV10CBS51388_010654Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010654-T1CBS51388_010654-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010654-T1.cdsCBS51388_010654-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010654-T1.exon3CBS51388_010654-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_010654-T1.exon2CBS51388_010654-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_010654-T1.exon1CBS51388_010654-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
NoteBUSCO:EOG09261O7R
DBxrefInterPro:IPR006594
DBxrefInterPro:IPR024964
DBxrefInterPro:IPR006595
DBxrefInterPro:IPR013144
DBxrefPFAM:PF10607
ProductGID complex subunit containing RING finger motif
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An17supercontigAn17:528368..529788 -
Powered by Drupal