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CBS51388_010677-T1, CBS51388_010677-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_010677-T1
Unique NameCBS51388_010677-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An17:590921..591922+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_010677-T1 ID=CBS51388_010677-T1|Name=CBS51388_010677-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1002bp|location=Sequence derived from alignment at An17:590921..591922+ (Aspergillus niger CBS 513.88)
ATGGCCGTTGGAAAGTACGTGAATGCCCTACTCTATTATGATTTATGTTG
CAGCAATTCGATTGTAGTAGTCTCTTACTGATTTTATGGCAGGAACAAGC
GCTTGTCGAAGGGCAAGAAGGGTGTTAAGAAGAGAACTGTCGACCCTTTC
ACCCGGAAAGACGAGTACTCTGTGAAGGTAAGTGTGCAACTTGAGGGTGT
GTGGATTTTGCTGACAGGAATAGGCTCCCTCGACCTTCCAGACCAGAGAG
TATGGCATCGCCCCTCCCCCCCAAATTTCGTCGTCGGGACTTTCAGATAT
TCTTTCGCCTCGTTATAATCATTTTTTGTCGCATTCCCCATGTGCAAACC
AGTCACTGACCAGTTCTTGTTGAAGTGTTGGAAAGACTCTGGTGAACCGT
ACCAGTGGTCTGAAGAACGCGAACGATTCCCTGAAGGGCCGTATCTTCGA
AGTCTCCCTTGCCGACTTGCAGAATGACGAGGACCATGCCTTCCGTAAGG
TCAAGCTCCGCGTGGACGAAATCCAGGGAAAGAACTGCCTGACCAACTTC
CACGGTCTGGATTTCACGACCGACAAGCTGCGATCCCTTGTGCGCAAGTG
GCAGTCGCTGATTGAAGCCAACGTCACTGTGAAGACGACCGATGACTATC
TTCTCCGTCTGTTCGCCATCGCCTTCACGAAGAGACGCCCCAACCAAATC
AAGAAGACTACATATGCTCGCTCGTCCCAAATCCGCGCTATTCGCAAGAA
GATGACCGAGATCATGCAGCGCGAGGCCGCTAGCTGCTCTCTCGCTCAGC
TTACTACCAAGTTGATCCCCGAAGTCATCGGTCGTGAGATTGAGAAGGCT
ACCCAGGGAATTTACCCCCTGCAGAACGTTCGTCCCCCTCGACCCTCGTA
TTCTATCAAATGATTGCGATCCATCTAATACTCTATTAGGTCCACATTCG
CAAGGTCAAGCTTCTTAAGTCCCCCAAGTTCGACCTCGGGTGCCCTCCTT
AA
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Coding sequence (CDS) from alignment at An17:590921..591922+

>CBS51388_010677-T1 ID=CBS51388_010677-T1|Name=CBS51388_010677-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3450bp|location=Sequence derived from alignment at An17:590921..591922+ (Aspergillus niger CBS 513.88)
ATGGCCGTTGGAAAGAACAAGCGCTTGTCGAAGGGCAAGAAGGGTGTTAA
GAAGAGAACTGTCGACCCTTTCACCCGGAAAGACGAGTACTCTGTGAAGG
CTCCCTCGACCTTCCAGACCAGAGATGTTGGAAAGACTCTGGTGAACCGT
ACCAGTGGTCTGAAGAACGCGAACGATTCCCTGAAGGGCCGTATCTTCGA
AGTCTCCCTTGCCGACTTGCAGAATGACGAGGACCATGCCTTCCGTAAGG
TCAAGCTCCGCGTGGACGAAATCCAGGGAAAGAACTGCCTGACCAACTTC
CACGGTCTGGATTTCACGACCGACAAGCTGCGATCCCTTGTGCGCAAGTG
GCAGTCGCTGATTGAAGCCAACGTCACTGTGAAGACGACCGATGACTATC
TTCTCCGTCTGTTCGCCATCGCCTTCACGAAGAGACGCCCCAACCAAATC
AAGAAGACTACATATGCTCGCTCGTCCCAAATCCGCGCTATTCGCAAGAA
GATGACCGAGATCATGCAGCGCGAGGCCGCTAGCTGCTCTCTCGCTCAGC
TTACTACCAAGTTGATCCCCGAAGTCATCGGTCGTGAGATTGAGAAGGCT
ACCCAGGGAATTTACCCCCTGCAGAACGTCCACATTCGCAAGGTCAAGCT
TCTTAAGTCCCCCAAGTTCGACCTCGGGTGCCCTCCTTAAATGGCCGTTG
GAAAGAACAAGCGCTTGTCGAAGGGCAAGAAGGGTGTTAAGAAGAGAACT
GTCGACCCTTTCACCCGGAAAGACGAGTACTCTGTGAAGGCTCCCTCGAC
CTTCCAGACCAGAGATGTTGGAAAGACTCTGGTGAACCGTACCAGTGGTC
TGAAGAACGCGAACGATTCCCTGAAGGGCCGTATCTTCGAAGTCTCCCTT
GCCGACTTGCAGAATGACGAGGACCATGCCTTCCGTAAGGTCAAGCTCCG
CGTGGACGAAATCCAGGGAAAGAACTGCCTGACCAACTTCCACGGTCTGG
ATTTCACGACCGACAAGCTGCGATCCCTTGTGCGCAAGTGGCAGTCGCTG
ATTGAAGCCAACGTCACTGTGAAGACGACCGATGACTATCTTCTCCGTCT
GTTCGCCATCGCCTTCACGAAGAGACGCCCCAACCAAATCAAGAAGACTA
CATATGCTCGCTCGTCCCAAATCCGCGCTATTCGCAAGAAGATGACCGAG
ATCATGCAGCGCGAGGCCGCTAGCTGCTCTCTCGCTCAGCTTACTACCAA
GTTGATCCCCGAAGTCATCGGTCGTGAGATTGAGAAGGCTACCCAGGGAA
TTTACCCCCTGCAGAACGTCCACATTCGCAAGGTCAAGCTTCTTAAGTCC
CCCAAGTTCGACCTCGGGTGCCCTCCTTAAATGGCCGTTGGAAAGAACAA
GCGCTTGTCGAAGGGCAAGAAGGGTGTTAAGAAGAGAACTGTCGACCCTT
TCACCCGGAAAGACGAGTACTCTGTGAAGGCTCCCTCGACCTTCCAGACC
AGAGATGTTGGAAAGACTCTGGTGAACCGTACCAGTGGTCTGAAGAACGC
GAACGATTCCCTGAAGGGCCGTATCTTCGAAGTCTCCCTTGCCGACTTGC
AGAATGACGAGGACCATGCCTTCCGTAAGGTCAAGCTCCGCGTGGACGAA
ATCCAGGGAAAGAACTGCCTGACCAACTTCCACGGTCTGGATTTCACGAC
CGACAAGCTGCGATCCCTTGTGCGCAAGTGGCAGTCGCTGATTGAAGCCA
ACGTCACTGTGAAGACGACCGATGACTATCTTCTCCGTCTGTTCGCCATC
GCCTTCACGAAGAGACGCCCCAACCAAATCAAGAAGACTACATATGCTCG
CTCGTCCCAAATCCGCGCTATTCGCAAGAAGATGACCGAGATCATGCAGC
GCGAGGCCGCTAGCTGCTCTCTCGCTCAGCTTACTACCAAGTTGATCCCC
GAAGTCATCGGTCGTGAGATTGAGAAGGCTACCCAGGGAATTTACCCCCT
GCAGAACGTCCACATTCGCAAGGTCAAGCTTCTTAAGTCCCCCAAGTTCG
ACCTCGGGTGCCCTCCTTAAATGGCCGTTGGAAAGAACAAGCGCTTGTCG
AAGGGCAAGAAGGGTGTTAAGAAGAGAACTGTCGACCCTTTCACCCGGAA
AGACGAGTACTCTGTGAAGGCTCCCTCGACCTTCCAGACCAGAGATGTTG
GAAAGACTCTGGTGAACCGTACCAGTGGTCTGAAGAACGCGAACGATTCC
CTGAAGGGCCGTATCTTCGAAGTCTCCCTTGCCGACTTGCAGAATGACGA
GGACCATGCCTTCCGTAAGGTCAAGCTCCGCGTGGACGAAATCCAGGGAA
AGAACTGCCTGACCAACTTCCACGGTCTGGATTTCACGACCGACAAGCTG
CGATCCCTTGTGCGCAAGTGGCAGTCGCTGATTGAAGCCAACGTCACTGT
GAAGACGACCGATGACTATCTTCTCCGTCTGTTCGCCATCGCCTTCACGA
AGAGACGCCCCAACCAAATCAAGAAGACTACATATGCTCGCTCGTCCCAA
ATCCGCGCTATTCGCAAGAAGATGACCGAGATCATGCAGCGCGAGGCCGC
TAGCTGCTCTCTCGCTCAGCTTACTACCAAGTTGATCCCCGAAGTCATCG
GTCGTGAGATTGAGAAGGCTACCCAGGGAATTTACCCCCTGCAGAACGTC
CACATTCGCAAGGTCAAGCTTCTTAAGTCCCCCAAGTTCGACCTCGGGTG
CCCTCCTTAAATGGCCGTTGGAAAGAACAAGCGCTTGTCGAAGGGCAAGA
AGGGTGTTAAGAAGAGAACTGTCGACCCTTTCACCCGGAAAGACGAGTAC
TCTGTGAAGGCTCCCTCGACCTTCCAGACCAGAGATGTTGGAAAGACTCT
GGTGAACCGTACCAGTGGTCTGAAGAACGCGAACGATTCCCTGAAGGGCC
GTATCTTCGAAGTCTCCCTTGCCGACTTGCAGAATGACGAGGACCATGCC
TTCCGTAAGGTCAAGCTCCGCGTGGACGAAATCCAGGGAAAGAACTGCCT
GACCAACTTCCACGGTCTGGATTTCACGACCGACAAGCTGCGATCCCTTG
TGCGCAAGTGGCAGTCGCTGATTGAAGCCAACGTCACTGTGAAGACGACC
GATGACTATCTTCTCCGTCTGTTCGCCATCGCCTTCACGAAGAGACGCCC
CAACCAAATCAAGAAGACTACATATGCTCGCTCGTCCCAAATCCGCGCTA
TTCGCAAGAAGATGACCGAGATCATGCAGCGCGAGGCCGCTAGCTGCTCT
CTCGCTCAGCTTACTACCAAGTTGATCCCCGAAGTCATCGGTCGTGAGAT
TGAGAAGGCTACCCAGGGAATTTACCCCCTGCAGAACGTCCACATTCGCA
AGGTCAAGCTTCTTAAGTCCCCCAAGTTCGACCTCGGGTGCCCTCCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS1CBS51388_010677Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010677-T1CBS51388_010677-T1-proteinAspergillus niger CBS 513.88polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010677-T1.exon1CBS51388_010677-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_010677-T1.exon2CBS51388_010677-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_010677-T1.exon3CBS51388_010677-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_010677-T1.exon4CBS51388_010677-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_010677-T1.exon5CBS51388_010677-T1.exon5Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_010677-T1.cdsCBS51388_010677-T1.cdsAspergillus niger CBS 513.88CDS


Properties
Property NameValue
DBxrefInterPro:IPR027500
DBxrefInterPro:IPR018281
DBxrefInterPro:IPR001593
DBxrefPFAM:PF01015
Productribosomal 40S subunit protein S1B
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An17supercontigAn17:590921..591922 +
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