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Sequences
The following sequences are available for this feature:
mRNA from alignment at An18:464960..466639- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_010847-T1 ID=CBS51388_010847-T1|Name=CBS51388_010847-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1680bp|location=Sequence derived from alignment at An18:464960..466639- (Aspergillus niger CBS 513.88)
ATGGCAAGCCCGACATCAGCTCTGGACAGCCGGTTGCCTCGTCATGCATC
ATCGGGCCCTGTTAATAGTACCGTGACAGCCCTCCAAGGAGCCACAGCTG
CTTTCAATGCAAATCCTGCCAGCAGAGCACGGCCACCTATTATCCATTAT
AGGTCTGGCGCATTCATGGAGCCTGTAGGGGTCAGCCACAATACTCCTGA
AATGGATCCGCCTCGCAACATTCAGACTCCAGAATTGCCCGAAAGTGGCT
CAGTCAAAGACAAGATCGGGAAGTTTAGTGCCTATCAGCAGCAGCCCTCT
GGCTTGAAAGATGCATTCGGGAAAACCCCAACGAGCATAGGGGCGAATAG
GTCACGCACTCCGCAGCAGATCGCTGCCCAGCTGGCCGCAGGAAGATCGA
CGCCAGGTGAAATCACTGCCACGCACACGGGCGTCAGCAGGACGCAAGGT
TCGAGACCGACGACTTCAAAACGCAGTGATGACAACGAGGGTCCGCCGTT
GCTAGCCCCAAAGCCGGTATGGGCTACGAGTGCAAACACGGCCTCGGTGA
ACAAGCTCCTTCGCAGCGAGGCCGATTTGCCAATTAGAGACAAGTCAATT
CAGCGAAGACCAGTAGCTCAGATATCTCCCATAGAGGCGGCGAGGTTGGC
TGCGAAGAAGCCTCGACCTCCACCTGTGCCACGAAAACCAGCTGCGGTTG
CCACTGGTCCAACCTCAGTTCCTATCAACGTACATTCCAAAGGCCCAGAG
AGTCCAGAGCCGACCTCCAAAAACCACTCCTCACGTCACCTTGAGGATAC
TACTATCCCTTTCAAGGCCCCGCCAGCACTTCCACCCCGAACTGGCGCTT
CGTCCGTGCCTCGGAAAGACCTGACAAATCATCGGCGGCTTTTAGACACC
AACCATGGGTCCCGGAGACGACCATCGACGCCTGGGACTGCATCGCTGTA
TACTACATCACTGAGCAATAGTACTACGAGTTTGCTCGACAGCTCCTCCG
GACTGGATGAAGGGGCCTTATCGGATGCGGTCGTGGCCTCGTCAAGGGCA
TCTGTTCGGGCTTCACAGGAAAGGAAAGTCCCACCGCCCCCACCGCCAGA
GCGCCGGGCGAGGTCTCGATCTCTAAAGCAATTCCCGCATACGGCCAAGG
GAGAACACACAGATTCATCTAGTCCATCCACACATTTACGACAGACCCTC
CGGGAACCGACCAAGATAGCCGAAAATGATGAGGGGTACCAAAGGCATAA
GCATCTGATTCGCAAGCATCCGCACAAGCATCACGAAGGTGACCGCAGAA
GATGGCGGAGTGAGATTACGGAGAAAGAGCGAAAGCGGTACGAGGGTGTC
TGGGCTGCGAACAAGGGATTGTTGCTCCCTCCCGCGCACTTGAGGGTCCC
CGAAGCGTACCCGCCGGAGTCCTCCGAGATGGTGGTCAACCTGGTGGCCG
CTGACATCTGGTCACGTAGTCGCCTGCCGCGACATGTTCTAGCACAAGTA
TGGGATTTAGTGGACGGGCAACATATTGGTCTTCTCACCCGAGAGGAATT
TGTGGTTGGGATGTGGTTGATCGACCAGCAGCTGAAAGGCCATAAACTCC
CACCCAGGGTGCCCGCCAGTGTGTGGGGAAGCGCCAAGCGGATATCAGGA
GTGCACATCCATGGGCTTCCTCCTGCCTGA back to topCoding sequence (CDS) from alignment at An18:464960..466639- >CBS51388_010847-T1 ID=CBS51388_010847-T1|Name=CBS51388_010847-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1680bp|location=Sequence derived from alignment at An18:464960..466639- (Aspergillus niger CBS 513.88)
ATGGCAAGCCCGACATCAGCTCTGGACAGCCGGTTGCCTCGTCATGCATC
ATCGGGCCCTGTTAATAGTACCGTGACAGCCCTCCAAGGAGCCACAGCTG
CTTTCAATGCAAATCCTGCCAGCAGAGCACGGCCACCTATTATCCATTAT
AGGTCTGGCGCATTCATGGAGCCTGTAGGGGTCAGCCACAATACTCCTGA
AATGGATCCGCCTCGCAACATTCAGACTCCAGAATTGCCCGAAAGTGGCT
CAGTCAAAGACAAGATCGGGAAGTTTAGTGCCTATCAGCAGCAGCCCTCT
GGCTTGAAAGATGCATTCGGGAAAACCCCAACGAGCATAGGGGCGAATAG
GTCACGCACTCCGCAGCAGATCGCTGCCCAGCTGGCCGCAGGAAGATCGA
CGCCAGGTGAAATCACTGCCACGCACACGGGCGTCAGCAGGACGCAAGGT
TCGAGACCGACGACTTCAAAACGCAGTGATGACAACGAGGGTCCGCCGTT
GCTAGCCCCAAAGCCGGTATGGGCTACGAGTGCAAACACGGCCTCGGTGA
ACAAGCTCCTTCGCAGCGAGGCCGATTTGCCAATTAGAGACAAGTCAATT
CAGCGAAGACCAGTAGCTCAGATATCTCCCATAGAGGCGGCGAGGTTGGC
TGCGAAGAAGCCTCGACCTCCACCTGTGCCACGAAAACCAGCTGCGGTTG
CCACTGGTCCAACCTCAGTTCCTATCAACGTACATTCCAAAGGCCCAGAG
AGTCCAGAGCCGACCTCCAAAAACCACTCCTCACGTCACCTTGAGGATAC
TACTATCCCTTTCAAGGCCCCGCCAGCACTTCCACCCCGAACTGGCGCTT
CGTCCGTGCCTCGGAAAGACCTGACAAATCATCGGCGGCTTTTAGACACC
AACCATGGGTCCCGGAGACGACCATCGACGCCTGGGACTGCATCGCTGTA
TACTACATCACTGAGCAATAGTACTACGAGTTTGCTCGACAGCTCCTCCG
GACTGGATGAAGGGGCCTTATCGGATGCGGTCGTGGCCTCGTCAAGGGCA
TCTGTTCGGGCTTCACAGGAAAGGAAAGTCCCACCGCCCCCACCGCCAGA
GCGCCGGGCGAGGTCTCGATCTCTAAAGCAATTCCCGCATACGGCCAAGG
GAGAACACACAGATTCATCTAGTCCATCCACACATTTACGACAGACCCTC
CGGGAACCGACCAAGATAGCCGAAAATGATGAGGGGTACCAAAGGCATAA
GCATCTGATTCGCAAGCATCCGCACAAGCATCACGAAGGTGACCGCAGAA
GATGGCGGAGTGAGATTACGGAGAAAGAGCGAAAGCGGTACGAGGGTGTC
TGGGCTGCGAACAAGGGATTGTTGCTCCCTCCCGCGCACTTGAGGGTCCC
CGAAGCGTACCCGCCGGAGTCCTCCGAGATGGTGGTCAACCTGGTGGCCG
CTGACATCTGGTCACGTAGTCGCCTGCCGCGACATGTTCTAGCACAAGTA
TGGGATTTAGTGGACGGGCAACATATTGGTCTTCTCACCCGAGAGGAATT
TGTGGTTGGGATGTGGTTGATCGACCAGCAGCTGAAAGGCCATAAACTCC
CACCCAGGGTGCCCGCCAGTGTGTGGGGAAGCGCCAAGCGGATATCAGGA
GTGCACATCCATGGGCTTCCTCCTGCCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011992 |
| DBxref | InterPro:IPR000261 |
| DBxref | PFAM:PF12763 |
| Product | Increased rDNA silencing protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An18 | supercontig | An18:464960..466639 - |
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