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Sequences
The following sequences are available for this feature:
mRNA from alignment at An18:710980..712208+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_010919-T1 ID=CBS51388_010919-T1|Name=CBS51388_010919-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1229bp|location=Sequence derived from alignment at An18:710980..712208+ (Aspergillus niger CBS 513.88)
ATGAATACCATCGACGCAACAGAACACTACGAAACCAGCGCCCACGGTAC
GTCCACCAACCACATACATCCATCACAATCTCATCCCCCTCCCAATTCCA
ACTTCTACCCTACAAACTAACAAGACGAAATATAGACCGGCCCCCCTCCC
TCCTAACCATCATCCTCGACACCAACCCACACGCCTGGGCACTCCTCAAC
CCCTCCCTTCCCCTCTCCACCGCCATCGCCAACATCCTCGTCTTCATCAA
CGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGTGGTATCCTCAC
ACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAGCCACCACCACC
ACCACCGCCAATAACCTAGACTCCGACGGCGACATCTCCATGCGCTCCCA
ACAACCACCTCCATCTACTCACACCAACATAAACAAATACCGCCCCTTCC
GCATCGTCGAAGAACAAGTCTCCACGCACCTCCACAACCTAATGTCCCAA
ACCACCCCAGAAACCCTCCAATCCACCACCTCAACTATGATGGCCGGCGC
GCTTACCCTAGCACTAAGCCACATCAACCGCCGCACGTTAGCATGGAATG
AAGCGCACGGGGGAGATATCGACACGACAAACCCCAATGACCCTTCTTCA
ACATCCTCCTCATCACATAATACAAAGGGTACTGCGGAATCAACCCTCCA
ATCACGCATCCTCATTCTCTCTGTGTCAAGTTCCACCGGTTCAGCGCATC
AATATATCCCCATCATGAATGCTATATTCGCTTGCCAGAGGCTGCATATT
CCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTATTCCTGCAGCAGGC
GTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGATGAGCCGAAGGGAC
TATTGCAGTACTTGATGATGGCGTTTTTGCCGGATCAGAGGAGTAGACGC
CATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTTCGGGCGGCGTGCTT
TTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTGTTCGATTTGTCTGA
GTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTTTGACTTGTGGGAGT
CGGTTGGATGTTAGTGATTATGGGGCTAAGCCGGCGGTGGTGGCTAGAAA
GAAGAAGAAGAAGAAGGTTAAGGGGAATGGGATGTCTGCGGCGGGGACGC
CTACGCCTACACCGACGCCGGGGCCGTGA back to topCoding sequence (CDS) from alignment at An18:710980..712208+ >CBS51388_010919-T1 ID=CBS51388_010919-T1|Name=CBS51388_010919-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2280bp|location=Sequence derived from alignment at An18:710980..712208+ (Aspergillus niger CBS 513.88)
ATGAATACCATCGACGCAACAGAACACTACGAAACCAGCGCCCACGACCG
GCCCCCCTCCCTCCTAACCATCATCCTCGACACCAACCCACACGCCTGGG
CACTCCTCAACCCCTCCCTTCCCCTCTCCACCGCCATCGCCAACATCCTC
GTCTTCATCAACGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGT
GGTATCCTCACACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAG
CCACCACCACCACCACCGCCAATAACCTAGACTCCGACGGCGACATCTCC
ATGCGCTCCCAACAACCACCTCCATCTACTCACACCAACATAAACAAATA
CCGCCCCTTCCGCATCGTCGAAGAACAAGTCTCCACGCACCTCCACAACC
TAATGTCCCAAACCACCCCAGAAACCCTCCAATCCACCACCTCAACTATG
ATGGCCGGCGCGCTTACCCTAGCACTAAGCCACATCAACCGCCGCACGTT
AGCATGGAATGAAGCGCACGGGGGAGATATCGACACGACAAACCCCAATG
ACCCTTCTTCAACATCCTCCTCATCACATAATACAAAGGGTACTGCGGAA
TCAACCCTCCAATCACGCATCCTCATTCTCTCTGTGTCAAGTTCCACCGG
TTCAGCGCATCAATATATCCCCATCATGAATGCTATATTCGCTTGCCAGA
GGCTGCATATTCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTATTC
CTGCAGCAGGCGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGATGA
GCCGAAGGGACTATTGCAGTACTTGATGATGGCGTTTTTGCCGGATCAGA
GGAGTAGACGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTTCGG
GCGGCGTGCTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTGTTC
GATTTGTCTGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTTTGA
CTTGTGGGAGTCGGTTGGATGTTAGTGATTATGGGGCTAAGCCGGCGGTG
GTGGCTAGAAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGGGATGTCTGC
GGCGGGGACGCCTACGCCTACACCGACGCCGGGGCCGTGAATGAATACCA
TCGACGCAACAGAACACTACGAAACCAGCGCCCACGACCGGCCCCCCTCC
CTCCTAACCATCATCCTCGACACCAACCCACACGCCTGGGCACTCCTCAA
CCCCTCCCTTCCCCTCTCCACCGCCATCGCCAACATCCTCGTCTTCATCA
ACGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGTGGTATCCTCA
CACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAGCCACCACCAC
CACCACCGCCAATAACCTAGACTCCGACGGCGACATCTCCATGCGCTCCC
AACAACCACCTCCATCTACTCACACCAACATAAACAAATACCGCCCCTTC
CGCATCGTCGAAGAACAAGTCTCCACGCACCTCCACAACCTAATGTCCCA
AACCACCCCAGAAACCCTCCAATCCACCACCTCAACTATGATGGCCGGCG
CGCTTACCCTAGCACTAAGCCACATCAACCGCCGCACGTTAGCATGGAAT
GAAGCGCACGGGGGAGATATCGACACGACAAACCCCAATGACCCTTCTTC
AACATCCTCCTCATCACATAATACAAAGGGTACTGCGGAATCAACCCTCC
AATCACGCATCCTCATTCTCTCTGTGTCAAGTTCCACCGGTTCAGCGCAT
CAATATATCCCCATCATGAATGCTATATTCGCTTGCCAGAGGCTGCATAT
TCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTATTCCTGCAGCAGG
CGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGATGAGCCGAAGGGA
CTATTGCAGTACTTGATGATGGCGTTTTTGCCGGATCAGAGGAGTAGACG
CCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTTCGGGCGGCGTGCT
TTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTGTTCGATTTGTCTG
AGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTTTGACTTGTGGGAG
TCGGTTGGATGTTAGTGATTATGGGGCTAAGCCGGCGGTGGTGGCTAGAA
AGAAGAAGAAGAAGAAGGTTAAGGGGAATGGGATGTCTGCGGCGGGGACG
CCTACGCCTACACCGACGCCGGGGCCGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000439 | transcription factor TFIIH core complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006289 | nucleotide-excision repair |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG0926369X |
| DBxref | InterPro:IPR004600 |
| DBxref | InterPro:IPR036465 |
| DBxref | PFAM:PF03850 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An18 | supercontig | An18:710980..712208 + |
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