|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at An18:1010431..1011056+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_011018-T1 ID=CBS51388_011018-T1|Name=CBS51388_011018-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=626bp|location=Sequence derived from alignment at An18:1010431..1011056+ (Aspergillus niger CBS 513.88)
ATGGTGCGCCCACCCCCTTTCCTTCCTCCCCCCTCAATATACACAACAAC
ACCACCACCACCACCAACAATATACTAACAATGGATATTAAATGAATACA
GTCGGACGGAGAAGAGACCCAATCCAACCCCGTTGTCGCCGCCGATGAGG
TCGAGGTTTCGGCCGACGCTGGCGCCGGTGGCCAGATGTCCGTCCTGGAT
GCCCTGAAGGGAGTTCTCCGTATCTCTCTCATCCACGACGGACTTGCCCG
TGGTCTGCGCGAGGCCGCTAAGGCCCTGGACCGTCGTCAGGCTCACATGT
GTGTCCTGAACGAGGGCTGCGAGGAGGAGGCCTACAAGAAGCTTGTTGTG
GCTCTTTGCTCCGAGCACAAGATCCCCCTCATCAAGGTCCCCGATGGAAA
GATGCTTGGCGAGTGGGTTGGTCTTTGTAAGTACCCTTTGGTTCCTTTGA
AGATTTGACCGTGTGGGTGATGTGTTTTGCTAATTGGGGTTTGTGGTATA
GGCCAGCTCGACCGTGAGGGTAACGCCCGCAAGGTCGTCAACTGCTCTTG
CGTCGTCGTTAAGGACTGGGGTGAGGAGTCCCAGGAGCGCTCTGTCCTCC
TTAACTACTTCCAGACTGAGCAGTAA back to topCoding sequence (CDS) from alignment at An18:1010431..1011056+ >CBS51388_011018-T1 ID=CBS51388_011018-T1|Name=CBS51388_011018-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1359bp|location=Sequence derived from alignment at An18:1010431..1011056+ (Aspergillus niger CBS 513.88)
ATGTCGGACGGAGAAGAGACCCAATCCAACCCCGTTGTCGCCGCCGATGA
GGTCGAGGTTTCGGCCGACGCTGGCGCCGGTGGCCAGATGTCCGTCCTGG
ATGCCCTGAAGGGAGTTCTCCGTATCTCTCTCATCCACGACGGACTTGCC
CGTGGTCTGCGCGAGGCCGCTAAGGCCCTGGACCGTCGTCAGGCTCACAT
GTGTGTCCTGAACGAGGGCTGCGAGGAGGAGGCCTACAAGAAGCTTGTTG
TGGCTCTTTGCTCCGAGCACAAGATCCCCCTCATCAAGGTCCCCGATGGA
AAGATGCTTGGCGAGTGGGTTGGTCTTTGCCAGCTCGACCGTGAGGGTAA
CGCCCGCAAGGTCGTCAACTGCTCTTGCGTCGTCGTTAAGGACTGGGGTG
AGGAGTCCCAGGAGCGCTCTGTCCTCCTTAACTACTTCCAGACTGAGCAG
TAAATGTCGGACGGAGAAGAGACCCAATCCAACCCCGTTGTCGCCGCCGA
TGAGGTCGAGGTTTCGGCCGACGCTGGCGCCGGTGGCCAGATGTCCGTCC
TGGATGCCCTGAAGGGAGTTCTCCGTATCTCTCTCATCCACGACGGACTT
GCCCGTGGTCTGCGCGAGGCCGCTAAGGCCCTGGACCGTCGTCAGGCTCA
CATGTGTGTCCTGAACGAGGGCTGCGAGGAGGAGGCCTACAAGAAGCTTG
TTGTGGCTCTTTGCTCCGAGCACAAGATCCCCCTCATCAAGGTCCCCGAT
GGAAAGATGCTTGGCGAGTGGGTTGGTCTTTGCCAGCTCGACCGTGAGGG
TAACGCCCGCAAGGTCGTCAACTGCTCTTGCGTCGTCGTTAAGGACTGGG
GTGAGGAGTCCCAGGAGCGCTCTGTCCTCCTTAACTACTTCCAGACTGAG
CAGTAAATGTCGGACGGAGAAGAGACCCAATCCAACCCCGTTGTCGCCGC
CGATGAGGTCGAGGTTTCGGCCGACGCTGGCGCCGGTGGCCAGATGTCCG
TCCTGGATGCCCTGAAGGGAGTTCTCCGTATCTCTCTCATCCACGACGGA
CTTGCCCGTGGTCTGCGCGAGGCCGCTAAGGCCCTGGACCGTCGTCAGGC
TCACATGTGTGTCCTGAACGAGGGCTGCGAGGAGGAGGCCTACAAGAAGC
TTGTTGTGGCTCTTTGCTCCGAGCACAAGATCCCCCTCATCAAGGTCCCC
GATGGAAAGATGCTTGGCGAGTGGGTTGGTCTTTGCCAGCTCGACCGTGA
GGGTAACGCCCGCAAGGTCGTCAACTGCTCTTGCGTCGTCGTTAAGGACT
GGGGTGAGGAGTCCCAGGAGCGCTCTGTCCTCCTTAACTACTTCCAGACT
GAGCAGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265CN0 |
| DBxref | InterPro:IPR029064 |
| DBxref | InterPro:IPR004038 |
| DBxref | InterPro:IPR000530 |
| DBxref | PFAM:PF01248 |
| Product | 40S ribosomal protein S12 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An18 | supercontig | An18:1010431..1011056 + |
|
