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Sequences
The following sequences are available for this feature:
mRNA from alignment at An18:1072933..1074877- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_011041-T1 ID=CBS51388_011041-T1|Name=CBS51388_011041-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1945bp|location=Sequence derived from alignment at An18:1072933..1074877- (Aspergillus niger CBS 513.88)
ATGTCGCTCCCCGGTCTCGATCTAACACAACCCTCCGCGGACCGCGAGTT
CGCCCCAGCCCCGCCCTCTCAGATTAGCCTTCCCAAAGGCTCAGAGTGGC
GGTTCGAAGTCGCCTTTGGCACGACCGTCCGCGTAAAGGTGAGCTGCCGT
GACCCCCTCAGCACACTACCCATCCCTCACGAATCACAAAAAGGACAGTT
GACTGACATATCTACCACCTGGAGAACTAGCTCTTAGCCGGAACCGCCGA
ACTCTTCGGCACCGAACTAGCCCCCTCTCAAACCTACACCTTCTCCGGCA
CGAAAGCAGCAATCTACACCTGGCATGGATGCACACTAGAAGTAAGCGCC
GGAGAGGCCATCACAGGTCTGGACAGCCTCGCCCCGGGAGGCACGAATGG
AACAACAGCGCGCGGACTCGGCGCGGGCGGCTGCCAGAGCGAGTATGTGG
CGGAGGAAACACCGATGGTTGAATACGCGAACGTGCATTTTGCGCTGGAG
ACACTACGACAGGAGGCCAAAGCGACGGGGAAAGATGGCCCGCGGGTACT
GATTCTCGGTCCTGAGGATGCGGGCAAGACAAGTCTGTCGAAGATCCTGA
CGGCGTATGCGACTAAGGTGGGCCGGCAGCCGCTGGTGGTTAATTTGGAT
CCTACGGAGGGCATGCTAAGTGTTCCGGGGACGTTGACGGCTACGGCGTT
CCGGACGATGATTGATGTTGAGGAAGGATGGGGGAGTAGTCCCATGTCCG
GGCCGAGTGCGGTGCCGGTGAAGTTGCCCTTGGTGTATTTCTATCCGATG
CAGAACCCGTTGGAGGCCGATGGCTCGGTGTATAAGGCTATTGTGTCGAG
GTTGGCGCTGTCGGTGACGGGGAGGATGGCGGAGGATGAGGATGCAAGGG
AGACGGGAATTATTGTGGATACGCCGGGAATTTTGAGTCAGAGTAAGGCT
GGTAATGTCGAGATGATTAATCATATTGTGACGGAGTTTGCGAGTGAGTT
TTTACTTGATCCTGGTTGGAAGGGTGTATGCACTGACGGGGTTATGGCAC
AGTTACGACGATCTTGGTCATTGGCTCCGAGCGACTGTACAGCATTATGA
TGAAGAACTTTGATAACAAGCCCACGGCTAGTGCGTCTGCAGCGGCGTCG
GATGAGCGCATTTCGGTGGTTAAGTTGTCCAAGTCTGGGGGTTGTGTGGA
TCGCGATGCGGCGTTCATGAAGGCTGTCAGCGAGTCGCAGATCCGGACAT
ACTTCTTCGGCAACCCAATTCCTTCGACGGCATCGGCAGCGCTGTCGCTG
TCTGCGTCGTCAACGACGAATGTTACGTTGTCGCCGCATGCGCAGCAGCT
AGACTTCAACGCTTTAGCGGTCTACAACTACACCATAGCGTCAGCAGAGG
AGGACGAAGACGAATATGACCCGTCGCAGCTGGGTACCGGCGATGCCTTC
CTCCCAGGTGGAAGCAACGACGTGGACCTGGGTCAGACTCCGCAAGAAGA
GGCTCCGGTCGCACCGACGCTGCCTGGGATCGCTGGACCGGTGAAGGAGA
CGGTGACGCCGGCGGGGTCGTCCAACGTGCCACTGAAGAAGGTACTGCCT
CCTGCGCCGACAGCGCTGGCCAATTCGCTGCTGGCCATTACACATGCAAG
CTCGACGGCCAGCCCGGCGGATGTGCGCGATGCCAGTATCATGGGCTTCT
TGTACGTGGCGGACGTGGACGCGGAGAAGGGCAAGATCCGAGTGCTGGCG
CCGGTTGGAGGTCGCGTGCCACCGCGGGCGATTGTATGGGGGAAGAAATG
GCCTGGGGAGGTGGTGGGATTGGTGGGATAGTTGATACCAGAAGTTATTC
GTAACTAGATGAGCGCTACATATGAAAGATATTCATGTCAAATTCAAACT
ATCTACATCTTCTAGAAAAAGTACATTGACTCCAGCAAGGTCTAG back to topCoding sequence (CDS) from alignment at An18:1072933..1074877- >CBS51388_011041-T1 ID=CBS51388_011041-T1|Name=CBS51388_011041-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=6648bp|location=Sequence derived from alignment at An18:1072933..1074877- (Aspergillus niger CBS 513.88)
AAAAAGTACATTGACTCCAGCAAGGTCTAGTTACGACGATCTTGGTCATT
GGCTCCGAGCGACTGTACAGCATTATGATGAAGAACTTTGATAACAAGCC
CACGGCTAGTGCGTCTGCAGCGGCGTCGGATGAGCGCATTTCGGTGGTTA
AGTTGTCCAAGTCTGGGGGTTGTGTGGATCGCGATGCGGCGTTCATGAAG
GCTGTCAGCGAGTCGCAGATCCGGACATACTTCTTCGGCAACCCAATTCC
TTCGACGGCATCGGCAGCGCTGTCGCTGTCTGCGTCGTCAACGACGAATG
TTACGTTGTCGCCGCATGCGCAGCAGCTAGACTTCAACGCTTTAGCGGTC
TACAACTACACCATAGCGTCAGCAGAGGAGGACGAAGACGAATATGACCC
GTCGCAGCTGGGTACCGGCGATGCCTTCCTCCCAGGTGGAAGCAACGACG
TGGACCTGGGTCAGACTCCGCAAGAAGAGGCTCCGGTCGCACCGACGCTG
CCTGGGATCGCTGGACCGGTGAAGGAGACGGTGACGCCGGCGGGGTCGTC
CAACGTGCCACTGAAGAAGGTACTGCCTCCTGCGCCGACAGCGCTGGCCA
ATTCGCTGCTGGCCATTACACATGCAAGCTCGACGGCCAGCCCGGCGGAT
GTGCGCGATGCCAGTATCATGGGCTTCTTGTACGTGGCGGACGTGGACGC
GGAGAAGGGCAAGATCCGAGTGCTGGCGCCGGTTGGAGGTCGCGTGCCAC
CGCGGGCGATTCTCTTAGCCGGAACCGCCGAACTCTTCGGCACCGAACTA
GCCCCCTCTCAAACCTACACCTTCTCCGGCACGAAAGCAGCAATCTACAC
CTGGCATGGATGCACACTAGAAGTAAGCGCCGGAGAGGCCATCACAGGTC
TGGACAGCCTCGCCCCGGGAGGCACGAATGGAACAACAGCGCGCGGACTC
GGCGCGGGCGGCTGCCAGAGCGAGTATGTGGCGGAGGAAACACCGATGGT
TGAATACGCGAACGTGCATTTTGCGCTGGAGACACTACGACAGGAGGCCA
AAGCGACGGGGAAAGATGGCCCGCGGGTACTGATTCTCGGTCCTGAGGAT
GCGGGCAAGACAAGTCTGTCGAAGATCCTGACGGCGTATGCGACTAAGGT
GGGCCGGCAGCCGCTGGTGGTTAATTTGGATCCTACGGAGGGCATGCTAA
GTGTTCCGGGGACGTTGACGGCTACGGCGTTCCGGACGATGATTGATGTT
GAGGAAGGATGGGGGAGTAGTCCCATGTCCGGGCCGAGTGCGGTGCCGGT
GAAGTTGCCCTTGGTGTATTTCTATCCGATGCAGAACCCGTTGGAGGCCG
ATGGCTCGGTGTATAAGGCTATTGTGTCGAGGTTGGCGCTGTCGGTGACG
GGGAGGATGGCGGAGGATGAGGATGCAAGGGAGACGGGAATTATTGTGGA
TACGCCGGGAATTTTGAGTCAGAGTAAGGCTGGTAATGTCGAGATGATTA
ATCATATTGTGACGGAGTTTGCGAATGTCGCTCCCCGGTCTCGATCTAAC
ACAACCCTCCGCGGACCGCGAGTTCGCCCCAGCCCCGCCCTCTCAGATTA
GCCTTCCCAAAGGCTCAGAGTGGCGGTTCGAAGTCGCCTTTGGCACGACC
GTCCGCGTAAAGAAAAAGTACATTGACTCCAGCAAGGTCTAGTTACGACG
ATCTTGGTCATTGGCTCCGAGCGACTGTACAGCATTATGATGAAGAACTT
TGATAACAAGCCCACGGCTAGTGCGTCTGCAGCGGCGTCGGATGAGCGCA
TTTCGGTGGTTAAGTTGTCCAAGTCTGGGGGTTGTGTGGATCGCGATGCG
GCGTTCATGAAGGCTGTCAGCGAGTCGCAGATCCGGACATACTTCTTCGG
CAACCCAATTCCTTCGACGGCATCGGCAGCGCTGTCGCTGTCTGCGTCGT
CAACGACGAATGTTACGTTGTCGCCGCATGCGCAGCAGCTAGACTTCAAC
GCTTTAGCGGTCTACAACTACACCATAGCGTCAGCAGAGGAGGACGAAGA
CGAATATGACCCGTCGCAGCTGGGTACCGGCGATGCCTTCCTCCCAGGTG
GAAGCAACGACGTGGACCTGGGTCAGACTCCGCAAGAAGAGGCTCCGGTC
GCACCGACGCTGCCTGGGATCGCTGGACCGGTGAAGGAGACGGTGACGCC
GGCGGGGTCGTCCAACGTGCCACTGAAGAAGGTACTGCCTCCTGCGCCGA
CAGCGCTGGCCAATTCGCTGCTGGCCATTACACATGCAAGCTCGACGGCC
AGCCCGGCGGATGTGCGCGATGCCAGTATCATGGGCTTCTTGTACGTGGC
GGACGTGGACGCGGAGAAGGGCAAGATCCGAGTGCTGGCGCCGGTTGGAG
GTCGCGTGCCACCGCGGGCGATTCTCTTAGCCGGAACCGCCGAACTCTTC
GGCACCGAACTAGCCCCCTCTCAAACCTACACCTTCTCCGGCACGAAAGC
AGCAATCTACACCTGGCATGGATGCACACTAGAAGTAAGCGCCGGAGAGG
CCATCACAGGTCTGGACAGCCTCGCCCCGGGAGGCACGAATGGAACAACA
GCGCGCGGACTCGGCGCGGGCGGCTGCCAGAGCGAGTATGTGGCGGAGGA
AACACCGATGGTTGAATACGCGAACGTGCATTTTGCGCTGGAGACACTAC
GACAGGAGGCCAAAGCGACGGGGAAAGATGGCCCGCGGGTACTGATTCTC
GGTCCTGAGGATGCGGGCAAGACAAGTCTGTCGAAGATCCTGACGGCGTA
TGCGACTAAGGTGGGCCGGCAGCCGCTGGTGGTTAATTTGGATCCTACGG
AGGGCATGCTAAGTGTTCCGGGGACGTTGACGGCTACGGCGTTCCGGACG
ATGATTGATGTTGAGGAAGGATGGGGGAGTAGTCCCATGTCCGGGCCGAG
TGCGGTGCCGGTGAAGTTGCCCTTGGTGTATTTCTATCCGATGCAGAACC
CGTTGGAGGCCGATGGCTCGGTGTATAAGGCTATTGTGTCGAGGTTGGCG
CTGTCGGTGACGGGGAGGATGGCGGAGGATGAGGATGCAAGGGAGACGGG
AATTATTGTGGATACGCCGGGAATTTTGAGTCAGAGTAAGGCTGGTAATG
TCGAGATGATTAATCATATTGTGACGGAGTTTGCGAATGTCGCTCCCCGG
TCTCGATCTAACACAACCCTCCGCGGACCGCGAGTTCGCCCCAGCCCCGC
CCTCTCAGATTAGCCTTCCCAAAGGCTCAGAGTGGCGGTTCGAAGTCGCC
TTTGGCACGACCGTCCGCGTAAAGAAAAAGTACATTGACTCCAGCAAGGT
CTAGTTACGACGATCTTGGTCATTGGCTCCGAGCGACTGTACAGCATTAT
GATGAAGAACTTTGATAACAAGCCCACGGCTAGTGCGTCTGCAGCGGCGT
CGGATGAGCGCATTTCGGTGGTTAAGTTGTCCAAGTCTGGGGGTTGTGTG
GATCGCGATGCGGCGTTCATGAAGGCTGTCAGCGAGTCGCAGATCCGGAC
ATACTTCTTCGGCAACCCAATTCCTTCGACGGCATCGGCAGCGCTGTCGC
TGTCTGCGTCGTCAACGACGAATGTTACGTTGTCGCCGCATGCGCAGCAG
CTAGACTTCAACGCTTTAGCGGTCTACAACTACACCATAGCGTCAGCAGA
GGAGGACGAAGACGAATATGACCCGTCGCAGCTGGGTACCGGCGATGCCT
TCCTCCCAGGTGGAAGCAACGACGTGGACCTGGGTCAGACTCCGCAAGAA
GAGGCTCCGGTCGCACCGACGCTGCCTGGGATCGCTGGACCGGTGAAGGA
GACGGTGACGCCGGCGGGGTCGTCCAACGTGCCACTGAAGAAGGTACTGC
CTCCTGCGCCGACAGCGCTGGCCAATTCGCTGCTGGCCATTACACATGCA
AGCTCGACGGCCAGCCCGGCGGATGTGCGCGATGCCAGTATCATGGGCTT
CTTGTACGTGGCGGACGTGGACGCGGAGAAGGGCAAGATCCGAGTGCTGG
CGCCGGTTGGAGGTCGCGTGCCACCGCGGGCGATTCTCTTAGCCGGAACC
GCCGAACTCTTCGGCACCGAACTAGCCCCCTCTCAAACCTACACCTTCTC
CGGCACGAAAGCAGCAATCTACACCTGGCATGGATGCACACTAGAAGTAA
GCGCCGGAGAGGCCATCACAGGTCTGGACAGCCTCGCCCCGGGAGGCACG
AATGGAACAACAGCGCGCGGACTCGGCGCGGGCGGCTGCCAGAGCGAGTA
TGTGGCGGAGGAAACACCGATGGTTGAATACGCGAACGTGCATTTTGCGC
TGGAGACACTACGACAGGAGGCCAAAGCGACGGGGAAAGATGGCCCGCGG
GTACTGATTCTCGGTCCTGAGGATGCGGGCAAGACAAGTCTGTCGAAGAT
CCTGACGGCGTATGCGACTAAGGTGGGCCGGCAGCCGCTGGTGGTTAATT
TGGATCCTACGGAGGGCATGCTAAGTGTTCCGGGGACGTTGACGGCTACG
GCGTTCCGGACGATGATTGATGTTGAGGAAGGATGGGGGAGTAGTCCCAT
GTCCGGGCCGAGTGCGGTGCCGGTGAAGTTGCCCTTGGTGTATTTCTATC
CGATGCAGAACCCGTTGGAGGCCGATGGCTCGGTGTATAAGGCTATTGTG
TCGAGGTTGGCGCTGTCGGTGACGGGGAGGATGGCGGAGGATGAGGATGC
AAGGGAGACGGGAATTATTGTGGATACGCCGGGAATTTTGAGTCAGAGTA
AGGCTGGTAATGTCGAGATGATTAATCATATTGTGACGGAGTTTGCGAAT
GTCGCTCCCCGGTCTCGATCTAACACAACCCTCCGCGGACCGCGAGTTCG
CCCCAGCCCCGCCCTCTCAGATTAGCCTTCCCAAAGGCTCAGAGTGGCGG
TTCGAAGTCGCCTTTGGCACGACCGTCCGCGTAAAGAAAAAGTACATTGA
CTCCAGCAAGGTCTAGTTACGACGATCTTGGTCATTGGCTCCGAGCGACT
GTACAGCATTATGATGAAGAACTTTGATAACAAGCCCACGGCTAGTGCGT
CTGCAGCGGCGTCGGATGAGCGCATTTCGGTGGTTAAGTTGTCCAAGTCT
GGGGGTTGTGTGGATCGCGATGCGGCGTTCATGAAGGCTGTCAGCGAGTC
GCAGATCCGGACATACTTCTTCGGCAACCCAATTCCTTCGACGGCATCGG
CAGCGCTGTCGCTGTCTGCGTCGTCAACGACGAATGTTACGTTGTCGCCG
CATGCGCAGCAGCTAGACTTCAACGCTTTAGCGGTCTACAACTACACCAT
AGCGTCAGCAGAGGAGGACGAAGACGAATATGACCCGTCGCAGCTGGGTA
CCGGCGATGCCTTCCTCCCAGGTGGAAGCAACGACGTGGACCTGGGTCAG
ACTCCGCAAGAAGAGGCTCCGGTCGCACCGACGCTGCCTGGGATCGCTGG
ACCGGTGAAGGAGACGGTGACGCCGGCGGGGTCGTCCAACGTGCCACTGA
AGAAGGTACTGCCTCCTGCGCCGACAGCGCTGGCCAATTCGCTGCTGGCC
ATTACACATGCAAGCTCGACGGCCAGCCCGGCGGATGTGCGCGATGCCAG
TATCATGGGCTTCTTGTACGTGGCGGACGTGGACGCGGAGAAGGGCAAGA
TCCGAGTGCTGGCGCCGGTTGGAGGTCGCGTGCCACCGCGGGCGATTCTC
TTAGCCGGAACCGCCGAACTCTTCGGCACCGAACTAGCCCCCTCTCAAAC
CTACACCTTCTCCGGCACGAAAGCAGCAATCTACACCTGGCATGGATGCA
CACTAGAAGTAAGCGCCGGAGAGGCCATCACAGGTCTGGACAGCCTCGCC
CCGGGAGGCACGAATGGAACAACAGCGCGCGGACTCGGCGCGGGCGGCTG
CCAGAGCGAGTATGTGGCGGAGGAAACACCGATGGTTGAATACGCGAACG
TGCATTTTGCGCTGGAGACACTACGACAGGAGGCCAAAGCGACGGGGAAA
GATGGCCCGCGGGTACTGATTCTCGGTCCTGAGGATGCGGGCAAGACAAG
TCTGTCGAAGATCCTGACGGCGTATGCGACTAAGGTGGGCCGGCAGCCGC
TGGTGGTTAATTTGGATCCTACGGAGGGCATGCTAAGTGTTCCGGGGACG
TTGACGGCTACGGCGTTCCGGACGATGATTGATGTTGAGGAAGGATGGGG
GAGTAGTCCCATGTCCGGGCCGAGTGCGGTGCCGGTGAAGTTGCCCTTGG
TGTATTTCTATCCGATGCAGAACCCGTTGGAGGCCGATGGCTCGGTGTAT
AAGGCTATTGTGTCGAGGTTGGCGCTGTCGGTGACGGGGAGGATGGCGGA
GGATGAGGATGCAAGGGAGACGGGAATTATTGTGGATACGCCGGGAATTT
TGAGTCAGAGTAAGGCTGGTAATGTCGAGATGATTAATCATATTGTGACG
GAGTTTGCGAATGTCGCTCCCCGGTCTCGATCTAACACAACCCTCCGCGG
ACCGCGAGTTCGCCCCAGCCCCGCCCTCTCAGATTAGCCTTCCCAAAGGC
TCAGAGTGGCGGTTCGAAGTCGCCTTTGGCACGACCGTCCGCGTAAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005849 | mRNA cleavage factor complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0031124 | mRNA 3'-end processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR028606 |
| DBxref | InterPro:IPR038238 |
| DBxref | InterPro:IPR032324 |
| DBxref | InterPro:IPR032319 |
| DBxref | InterPro:IPR010655 |
| DBxref | InterPro:IPR038239 |
| DBxref | PFAM:PF16575 |
| DBxref | PFAM:PF16573 |
| DBxref | PFAM:PF06807 |
| Product | Cleavage polyadenylation factor subunit clp1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An18 | supercontig | An18:1072933..1074877 - |
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