You are here

Home

CBS51388_011043-T1, CBS51388_011043-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_011043-T1
Unique NameCBS51388_011043-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An18:1079229..1080226+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_011043-T1 ID=CBS51388_011043-T1|Name=CBS51388_011043-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=998bp|location=Sequence derived from alignment at An18:1079229..1080226+ (Aspergillus niger CBS 513.88)
ATGCCTGAGCACGAAGAAGACCTCGTCGCCTCCCAGACCGAGGGTTTCAA
GGTCGGAGAGAAGAAGACCATTGAAGAGTACCAGAACCTTGGTATGTGCT
ATCTACGCTGGCCTACCCCCTCCCGGGCAATCCCATACCCCTCCCACTCC
CCGTGGTAGTAGCCTCGTGGCATCCAGCATCGCCGCCGCCTCCCCCCTTG
CTTGCTGCCCAGTCCCGTCAAACGTACAGCGCGAGCATTCCTGATAACCC
CACCGTTGAAATTGAATTTGCGTCTCTCTCTCTCTCCTCTCTCTCCCCCG
CAAACTTGGCTTTTTCTTGGAATCCTCCACTTGCCTCAAATTTCGTATCT
AATTCAAATCCCCCACAGACAAGAACGACGAGTCTCTCAACCGCTGGAAG
GCCTCTCTGGGTCTGGCCACTGGAAATCCCATTGGCGACCCCAATGATCC
CAGAAAGTGCATCATCAAGTCCCTTGCCCTGGAGGTGCAGGGACGTCCCG
ATGTTGTGATTGACCTGTCTACTCCCCATGCGCTCGAGACCCTCAAGGAC
AAGCCCTTCACGATCAAGGAGGGCGCCACCTTCCACATCAAGGTCGTCTT
TCAGGTGCACCATGAGGTTCTGAGCGGTCTCAAGTACCTGCAGGTGGTGA
AGCGCAAGGGTATCAGAGTTAGCAAGGACGAGGAGATGCTGGTAAGTACT
CTCATCTCGACAATCGCAGGATGTAAGCCATGTACTAAATCGCTTATAGG
GAAGCTACGCTCCCAGCACCACCGACAAGCCCGTCTACGAGAAGAAGTGT
AAGCCACTACCCTACTATATGACACAAGTAGAAAGGAAAAAGATATAAAA
GTACTAACCCGACGCAGTCAACGCCGAGGAAGCCCCCTCAGGCATGATGT
ACCGTGGCCACTACAACGCCGTGTCCAAGTTCGTCGACGATGACAACCAC
ACCCACCTCCAGTTCGAGTGGTCCTTCGACATCGCCAAGGACTGGTAG
back to top

Coding sequence (CDS) from alignment at An18:1079229..1080226+

>CBS51388_011043-T1 ID=CBS51388_011043-T1|Name=CBS51388_011043-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2376bp|location=Sequence derived from alignment at An18:1079229..1080226+ (Aspergillus niger CBS 513.88)
ATGCCTGAGCACGAAGAAGACCTCGTCGCCTCCCAGACCGAGGGTTTCAA
GGTCGGAGAGAAGAAGACCATTGAAGAGTACCAGAACCTTGACAAGAACG
ACGAGTCTCTCAACCGCTGGAAGGCCTCTCTGGGTCTGGCCACTGGAAAT
CCCATTGGCGACCCCAATGATCCCAGAAAGTGCATCATCAAGTCCCTTGC
CCTGGAGGTGCAGGGACGTCCCGATGTTGTGATTGACCTGTCTACTCCCC
ATGCGCTCGAGACCCTCAAGGACAAGCCCTTCACGATCAAGGAGGGCGCC
ACCTTCCACATCAAGGTCGTCTTTCAGGTGCACCATGAGGTTCTGAGCGG
TCTCAAGTACCTGCAGGTGGTGAAGCGCAAGGGTATCAGAGTTAGCAAGG
ACGAGGAGATGCTGGGAAGCTACGCTCCCAGCACCACCGACAAGCCCGTC
TACGAGAAGAAGTTCAACGCCGAGGAAGCCCCCTCAGGCATGATGTACCG
TGGCCACTACAACGCCGTGTCCAAGTTCGTCGACGATGACAACCACACCC
ACCTCCAGTTCGAGTGGTCCTTCGACATCGCCAAGGACTGGTAGATGCCT
GAGCACGAAGAAGACCTCGTCGCCTCCCAGACCGAGGGTTTCAAGGTCGG
AGAGAAGAAGACCATTGAAGAGTACCAGAACCTTGACAAGAACGACGAGT
CTCTCAACCGCTGGAAGGCCTCTCTGGGTCTGGCCACTGGAAATCCCATT
GGCGACCCCAATGATCCCAGAAAGTGCATCATCAAGTCCCTTGCCCTGGA
GGTGCAGGGACGTCCCGATGTTGTGATTGACCTGTCTACTCCCCATGCGC
TCGAGACCCTCAAGGACAAGCCCTTCACGATCAAGGAGGGCGCCACCTTC
CACATCAAGGTCGTCTTTCAGGTGCACCATGAGGTTCTGAGCGGTCTCAA
GTACCTGCAGGTGGTGAAGCGCAAGGGTATCAGAGTTAGCAAGGACGAGG
AGATGCTGGGAAGCTACGCTCCCAGCACCACCGACAAGCCCGTCTACGAG
AAGAAGTTCAACGCCGAGGAAGCCCCCTCAGGCATGATGTACCGTGGCCA
CTACAACGCCGTGTCCAAGTTCGTCGACGATGACAACCACACCCACCTCC
AGTTCGAGTGGTCCTTCGACATCGCCAAGGACTGGTAGATGCCTGAGCAC
GAAGAAGACCTCGTCGCCTCCCAGACCGAGGGTTTCAAGGTCGGAGAGAA
GAAGACCATTGAAGAGTACCAGAACCTTGACAAGAACGACGAGTCTCTCA
ACCGCTGGAAGGCCTCTCTGGGTCTGGCCACTGGAAATCCCATTGGCGAC
CCCAATGATCCCAGAAAGTGCATCATCAAGTCCCTTGCCCTGGAGGTGCA
GGGACGTCCCGATGTTGTGATTGACCTGTCTACTCCCCATGCGCTCGAGA
CCCTCAAGGACAAGCCCTTCACGATCAAGGAGGGCGCCACCTTCCACATC
AAGGTCGTCTTTCAGGTGCACCATGAGGTTCTGAGCGGTCTCAAGTACCT
GCAGGTGGTGAAGCGCAAGGGTATCAGAGTTAGCAAGGACGAGGAGATGC
TGGGAAGCTACGCTCCCAGCACCACCGACAAGCCCGTCTACGAGAAGAAG
TTCAACGCCGAGGAAGCCCCCTCAGGCATGATGTACCGTGGCCACTACAA
CGCCGTGTCCAAGTTCGTCGACGATGACAACCACACCCACCTCCAGTTCG
AGTGGTCCTTCGACATCGCCAAGGACTGGTAGATGCCTGAGCACGAAGAA
GACCTCGTCGCCTCCCAGACCGAGGGTTTCAAGGTCGGAGAGAAGAAGAC
CATTGAAGAGTACCAGAACCTTGACAAGAACGACGAGTCTCTCAACCGCT
GGAAGGCCTCTCTGGGTCTGGCCACTGGAAATCCCATTGGCGACCCCAAT
GATCCCAGAAAGTGCATCATCAAGTCCCTTGCCCTGGAGGTGCAGGGACG
TCCCGATGTTGTGATTGACCTGTCTACTCCCCATGCGCTCGAGACCCTCA
AGGACAAGCCCTTCACGATCAAGGAGGGCGCCACCTTCCACATCAAGGTC
GTCTTTCAGGTGCACCATGAGGTTCTGAGCGGTCTCAAGTACCTGCAGGT
GGTGAAGCGCAAGGGTATCAGAGTTAGCAAGGACGAGGAGATGCTGGGAA
GCTACGCTCCCAGCACCACCGACAAGCCCGTCTACGAGAAGAAGTTCAAC
GCCGAGGAAGCCCCCTCAGGCATGATGTACCGTGGCCACTACAACGCCGT
GTCCAAGTTCGTCGACGATGACAACCACACCCACCTCCAGTTCGAGTGGT
CCTTCGACATCGCCAAGGACTGGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0005094Rho GDP-dissociation inhibitor activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_011043CBS51388_011043Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_011043-T1.exon1CBS51388_011043-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_011043-T1.exon2CBS51388_011043-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_011043-T1.exon3CBS51388_011043-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_011043-T1.exon4CBS51388_011043-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_011043-T1.cdsCBS51388_011043-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_011043-T1CBS51388_011043-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264KK7
DBxrefInterPro:IPR014756
DBxrefInterPro:IPR000406
DBxrefInterPro:IPR024792
DBxrefPFAM:PF02115
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An18supercontigAn18:1079229..1080226 +
Powered by Drupal