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CBS51388_011058-T1, CBS51388_011058-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_011058-T1
Unique NameCBS51388_011058-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An18:1124523..1125964+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_011058-T1 ID=CBS51388_011058-T1|Name=CBS51388_011058-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1442bp|location=Sequence derived from alignment at An18:1124523..1125964+ (Aspergillus niger CBS 513.88)
ATGCAACTAAGAGCTTCGGTTTTGCTCTCTTTCCTGGGGCTGGCCTCCGT
TGGCCATGCAGGTAATGTGGAAAACAACCACAATGTCTGCACCGTCCGAG
CAAACGGGGGACACCAAGATGACGTCCCCAATATTATGGCGGCGTTCAAA
GAGTGTGGCAATGGAGGTACCATTATTTTCCCCGAAGACCAATCGTACTG
GATTGCGACGAGACTGCATCCCACATTGAAGGACGTCGCAATCGAATGGC
GGGGGAAGTGGACAGTAAGACTCCCTCACTATCCATCTCGTGACTTGTGA
AACGCTGATTCGGTCCAGTTTTCCGACAACCTCACCTACTGGCGTAACAA
CTCCTACCCCATTGCGTTCCAGAACCATCATGCCGGCTTCATTATTAGCG
GCGACAACATCACCATCAATGGCTATGGCACCGGCGGCATTGATGGCAAT
GGCAATACTTGGTACACAGCCGAGAAGGGCGACACGCAGCCGGGGCGTCC
GATGCCATTTGTCTTTTGGAACGTGTCTGAGGTTATTGTTGACAGTTTCT
ACGTCAAGGATCCGCCCCTCTGGAGTGTCAACATCATGAACGGGACTAAC
ATGCGTTTCAACAATATCTACTGCAACGCCACGGCTGTAGATGCCCCCTG
GGGCGATAACTGGGTGCAGAATACGGATGGTTTCGGTATGATTCTTTTTG
TCCGCGCTCTAGTGGAATGGGTTAGGTTCTGACTAGCACTCGTATCCAGA
TACCATGGACGCTACCAACATCCAGCTCACCAACTTCGTCTACCAAGGCG
GAGATGACTGCATCGCTATCAAGCCCCGCTCCTACAACATCGACATCCAG
AATGTTACCTGCCGTGGAGGCAACGGCATTGCCATTGGCAGCTTGGGTCA
ATATTTGGAAGATAGCAGTGTTGCTAACATTCGCGTGGACAAGGTCAATG
TACGTGATTGTTTCCCGGCCACCATCGCCATTAGTATTAACCGTAATCCA
GATCATCCGCTACAACGAAGACATGCACAACAGCGCCTACCTCAAGACCT
GGGTCGGAGCTCTCGTCCCCCAAAGTTCCTACGAAAGCGCCGGCGTACCT
CGTGGCGATGGCTGGGGCAGCATCCGTAACGTCCTATTTTCAAACTTCAA
TGTACAAGGCGCAAGCGCTGGCCCTTCCATCAGTCAGGACAGTGGAGACA
ACGGTTCCTATGCGGGTACAAGCAAGATGTCTATTTCAAATGTTGCGTTT
GTCAATTTCACGGGATGGGTGGATACTGAGAAGTCTGTGGTCTCGACGGT
CTCCTGCTCAGAGGTACATCCGTGCTACAATATCGACTATGACAATGTGG
TGTTGTATCCAGGGAAGAATGCCACAACAGCTGGGACAGGGTCTTGTAAA
TATACAGCTGATGGAGGAGTGCATGGGTTGAGTGGGTGTTGA
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Coding sequence (CDS) from alignment at An18:1124523..1125964+

>CBS51388_011058-T1 ID=CBS51388_011058-T1|Name=CBS51388_011058-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=5088bp|location=Sequence derived from alignment at An18:1124523..1125964+ (Aspergillus niger CBS 513.88)
ATGCAACTAAGAGCTTCGGTTTTGCTCTCTTTCCTGGGGCTGGCCTCCGT
TGGCCATGCAGGTAATGTGGAAAACAACCACAATGTCTGCACCGTCCGAG
CAAACGGGGGACACCAAGATGACGTCCCCAATATTATGGCGGCGTTCAAA
GAGTGTGGCAATGGAGGTACCATTATTTTCCCCGAAGACCAATCGTACTG
GATTGCGACGAGACTGCATCCCACATTGAAGGACGTCGCAATCGAATGGC
GGGGGAAGTGGACATTTTCCGACAACCTCACCTACTGGCGTAACAACTCC
TACCCCATTGCGTTCCAGAACCATCATGCCGGCTTCATTATTAGCGGCGA
CAACATCACCATCAATGGCTATGGCACCGGCGGCATTGATGGCAATGGCA
ATACTTGGTACACAGCCGAGAAGGGCGACACGCAGCCGGGGCGTCCGATG
CCATTTGTCTTTTGGAACGTGTCTGAGGTTATTGTTGACAGTTTCTACGT
CAAGGATCCGCCCCTCTGGAGTGTCAACATCATGAACGGGACTAACATGC
GTTTCAACAATATCTACTGCAACGCCACGGCTGTAGATGCCCCCTGGGGC
GATAACTGGGTGCAGAATACGGATGGTTTCGATACCATGGACGCTACCAA
CATCCAGCTCACCAACTTCGTCTACCAAGGCGGAGATGACTGCATCGCTA
TCAAGCCCCGCTCCTACAACATCGACATCCAGAATGTTACCTGCCGTGGA
GGCAACGGCATTGCCATTGGCAGCTTGGGTCAATATTTGGAAGATAGCAG
TGTTGCTAACATTCGCGTGGACAAGGTCAATATCATCCGCTACAACGAAG
ACATGCACAACAGCGCCTACCTCAAGACCTGGGTCGGAGCTCTCGTCCCC
CAAAGTTCCTACGAAAGCGCCGGCGTACCTCGTGGCGATGGCTGGGGCAG
CATCCGTAACGTCCTATTTTCAAACTTCAATGTACAAGGCGCAAGCGCTG
GCCCTTCCATCAGTCAGGACAGTGGAGACAACGGTTCCTATGCGGGTACA
AGCAAGATGTCTATTTCAAATGTTGCGTTTGTCAATTTCACGGGATGGGT
GGATACTGAGAAGTCTGTGGTCTCGACGGTCTCCTGCTCAGAGGTACATC
CGTGCTACAATATCGACTATGACAATGTGGTGTTGTATCCAGGGAAGAAT
GCCACAACAGCTGGGACAGGGTCTTGTAAATATACAGCTGATGGAGGAGT
GCATGGGTTGAGTGGGTGTTGAATGCAACTAAGAGCTTCGGTTTTGCTCT
CTTTCCTGGGGCTGGCCTCCGTTGGCCATGCAGGTAATGTGGAAAACAAC
CACAATGTCTGCACCGTCCGAGCAAACGGGGGACACCAAGATGACGTCCC
CAATATTATGGCGGCGTTCAAAGAGTGTGGCAATGGAGGTACCATTATTT
TCCCCGAAGACCAATCGTACTGGATTGCGACGAGACTGCATCCCACATTG
AAGGACGTCGCAATCGAATGGCGGGGGAAGTGGACATTTTCCGACAACCT
CACCTACTGGCGTAACAACTCCTACCCCATTGCGTTCCAGAACCATCATG
CCGGCTTCATTATTAGCGGCGACAACATCACCATCAATGGCTATGGCACC
GGCGGCATTGATGGCAATGGCAATACTTGGTACACAGCCGAGAAGGGCGA
CACGCAGCCGGGGCGTCCGATGCCATTTGTCTTTTGGAACGTGTCTGAGG
TTATTGTTGACAGTTTCTACGTCAAGGATCCGCCCCTCTGGAGTGTCAAC
ATCATGAACGGGACTAACATGCGTTTCAACAATATCTACTGCAACGCCAC
GGCTGTAGATGCCCCCTGGGGCGATAACTGGGTGCAGAATACGGATGGTT
TCGATACCATGGACGCTACCAACATCCAGCTCACCAACTTCGTCTACCAA
GGCGGAGATGACTGCATCGCTATCAAGCCCCGCTCCTACAACATCGACAT
CCAGAATGTTACCTGCCGTGGAGGCAACGGCATTGCCATTGGCAGCTTGG
GTCAATATTTGGAAGATAGCAGTGTTGCTAACATTCGCGTGGACAAGGTC
AATATCATCCGCTACAACGAAGACATGCACAACAGCGCCTACCTCAAGAC
CTGGGTCGGAGCTCTCGTCCCCCAAAGTTCCTACGAAAGCGCCGGCGTAC
CTCGTGGCGATGGCTGGGGCAGCATCCGTAACGTCCTATTTTCAAACTTC
AATGTACAAGGCGCAAGCGCTGGCCCTTCCATCAGTCAGGACAGTGGAGA
CAACGGTTCCTATGCGGGTACAAGCAAGATGTCTATTTCAAATGTTGCGT
TTGTCAATTTCACGGGATGGGTGGATACTGAGAAGTCTGTGGTCTCGACG
GTCTCCTGCTCAGAGGTACATCCGTGCTACAATATCGACTATGACAATGT
GGTGTTGTATCCAGGGAAGAATGCCACAACAGCTGGGACAGGGTCTTGTA
AATATACAGCTGATGGAGGAGTGCATGGGTTGAGTGGGTGTTGAATGCAA
CTAAGAGCTTCGGTTTTGCTCTCTTTCCTGGGGCTGGCCTCCGTTGGCCA
TGCAGGTAATGTGGAAAACAACCACAATGTCTGCACCGTCCGAGCAAACG
GGGGACACCAAGATGACGTCCCCAATATTATGGCGGCGTTCAAAGAGTGT
GGCAATGGAGGTACCATTATTTTCCCCGAAGACCAATCGTACTGGATTGC
GACGAGACTGCATCCCACATTGAAGGACGTCGCAATCGAATGGCGGGGGA
AGTGGACATTTTCCGACAACCTCACCTACTGGCGTAACAACTCCTACCCC
ATTGCGTTCCAGAACCATCATGCCGGCTTCATTATTAGCGGCGACAACAT
CACCATCAATGGCTATGGCACCGGCGGCATTGATGGCAATGGCAATACTT
GGTACACAGCCGAGAAGGGCGACACGCAGCCGGGGCGTCCGATGCCATTT
GTCTTTTGGAACGTGTCTGAGGTTATTGTTGACAGTTTCTACGTCAAGGA
TCCGCCCCTCTGGAGTGTCAACATCATGAACGGGACTAACATGCGTTTCA
ACAATATCTACTGCAACGCCACGGCTGTAGATGCCCCCTGGGGCGATAAC
TGGGTGCAGAATACGGATGGTTTCGATACCATGGACGCTACCAACATCCA
GCTCACCAACTTCGTCTACCAAGGCGGAGATGACTGCATCGCTATCAAGC
CCCGCTCCTACAACATCGACATCCAGAATGTTACCTGCCGTGGAGGCAAC
GGCATTGCCATTGGCAGCTTGGGTCAATATTTGGAAGATAGCAGTGTTGC
TAACATTCGCGTGGACAAGGTCAATATCATCCGCTACAACGAAGACATGC
ACAACAGCGCCTACCTCAAGACCTGGGTCGGAGCTCTCGTCCCCCAAAGT
TCCTACGAAAGCGCCGGCGTACCTCGTGGCGATGGCTGGGGCAGCATCCG
TAACGTCCTATTTTCAAACTTCAATGTACAAGGCGCAAGCGCTGGCCCTT
CCATCAGTCAGGACAGTGGAGACAACGGTTCCTATGCGGGTACAAGCAAG
ATGTCTATTTCAAATGTTGCGTTTGTCAATTTCACGGGATGGGTGGATAC
TGAGAAGTCTGTGGTCTCGACGGTCTCCTGCTCAGAGGTACATCCGTGCT
ACAATATCGACTATGACAATGTGGTGTTGTATCCAGGGAAGAATGCCACA
ACAGCTGGGACAGGGTCTTGTAAATATACAGCTGATGGAGGAGTGCATGG
GTTGAGTGGGTGTTGAATGCAACTAAGAGCTTCGGTTTTGCTCTCTTTCC
TGGGGCTGGCCTCCGTTGGCCATGCAGGTAATGTGGAAAACAACCACAAT
GTCTGCACCGTCCGAGCAAACGGGGGACACCAAGATGACGTCCCCAATAT
TATGGCGGCGTTCAAAGAGTGTGGCAATGGAGGTACCATTATTTTCCCCG
AAGACCAATCGTACTGGATTGCGACGAGACTGCATCCCACATTGAAGGAC
GTCGCAATCGAATGGCGGGGGAAGTGGACATTTTCCGACAACCTCACCTA
CTGGCGTAACAACTCCTACCCCATTGCGTTCCAGAACCATCATGCCGGCT
TCATTATTAGCGGCGACAACATCACCATCAATGGCTATGGCACCGGCGGC
ATTGATGGCAATGGCAATACTTGGTACACAGCCGAGAAGGGCGACACGCA
GCCGGGGCGTCCGATGCCATTTGTCTTTTGGAACGTGTCTGAGGTTATTG
TTGACAGTTTCTACGTCAAGGATCCGCCCCTCTGGAGTGTCAACATCATG
AACGGGACTAACATGCGTTTCAACAATATCTACTGCAACGCCACGGCTGT
AGATGCCCCCTGGGGCGATAACTGGGTGCAGAATACGGATGGTTTCGATA
CCATGGACGCTACCAACATCCAGCTCACCAACTTCGTCTACCAAGGCGGA
GATGACTGCATCGCTATCAAGCCCCGCTCCTACAACATCGACATCCAGAA
TGTTACCTGCCGTGGAGGCAACGGCATTGCCATTGGCAGCTTGGGTCAAT
ATTTGGAAGATAGCAGTGTTGCTAACATTCGCGTGGACAAGGTCAATATC
ATCCGCTACAACGAAGACATGCACAACAGCGCCTACCTCAAGACCTGGGT
CGGAGCTCTCGTCCCCCAAAGTTCCTACGAAAGCGCCGGCGTACCTCGTG
GCGATGGCTGGGGCAGCATCCGTAACGTCCTATTTTCAAACTTCAATGTA
CAAGGCGCAAGCGCTGGCCCTTCCATCAGTCAGGACAGTGGAGACAACGG
TTCCTATGCGGGTACAAGCAAGATGTCTATTTCAAATGTTGCGTTTGTCA
ATTTCACGGGATGGGTGGATACTGAGAAGTCTGTGGTCTCGACGGTCTCC
TGCTCAGAGGTACATCCGTGCTACAATATCGACTATGACAATGTGGTGTT
GTATCCAGGGAAGAATGCCACAACAGCTGGGACAGGGTCTTGTAAATATA
CAGCTGATGGAGGAGTGCATGGGTTGAGTGGGTGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_011058CBS51388_011058Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_011058-T1.exon1CBS51388_011058-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_011058-T1.exon2CBS51388_011058-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_011058-T1.exon3CBS51388_011058-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_011058-T1.exon4CBS51388_011058-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_011058-T1.cdsCBS51388_011058-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_011058-T1CBS51388_011058-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-20)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR000743
DBxrefPFAM:PF00295
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An18supercontigAn18:1124523..1125964 +
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