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Sequences
The following sequences are available for this feature:
mRNA from alignment at An18:1183169..1184724+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_011083-T1 ID=CBS51388_011083-T1|Name=CBS51388_011083-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1556bp|location=Sequence derived from alignment at An18:1183169..1184724+ (Aspergillus niger CBS 513.88)
ATGCCTGGAGTCAAGAAGCGCAAGGTCGCCCGTGAGGCACCTGCGCCTGC
GCCCGCACAAGAGAGCGATGTCGAATCTTCCACCCCAGAGCAAACGCAAG
AACCAGAAGCACAAGAGCAAGAACAAGAAGAGGGACAGTCCAAGACATTC
AAGGAACTAGGAATCATCGAACAGCTATGCGAGGCTTGCGAGACCATGGG
CTACAAAGCACCTACACCTATTCAGCGGGAGTCGATTCCTCTGGCTCTTA
AAGGCCGTGATTTGATCGGTCTTGCAGAGACCGGAAGTGGAAAGACGGCA
GCGTTTGCTCTTCCCATCCTCCAAGGTACGTTTCCAGCTACAACAATCTT
GTATCGCCTTTTATCGGCGCTCCCAAATATGACTAGATCAAATAACTAAC
ATCACCCCACAGCCTTGATGGAAAAGCCCCAACCCTTCTTCGGCCTCGTC
CTCGCCCCAACCCGAGAACTCGCCTACCAGATCTCCAAATCTTTCGAGTC
CCTAGGCGCCAGCATGGGTGTGCGAAGCTGCGTCATCGTCGGTGGCATGG
ACATGGTCTCTCAGTCAATTTCCCTCGGCAAAAAGCCCCATATCATCGTG
GCCACCCCTGGTCGTCTTCTGGACCACCTCGAGAACACCAAGGGCTTCTC
CCTCCGCAACCTGAAGTACCTGGTGATGGACGAAGCGGATCGACTTCTTG
ACATGGACTTCGGACCCCTCCTCGACAAGATCCTGAAAGTCCTGCCCCGT
GAGCGCCGCACATTCCTCTTCTCTGCGACGATGAGCTCAAAGGTCGAATC
CCTCCAACGTGCCTCCCTCTCCAATCCGCTCCGTGTCTCTGTCTCCACAA
GCAAATACCAGACCGTCTCGACTCTCCTCCAATCTTACCTCTTCATTCCC
CAGAAGCACAAGGACCTGTACCTTGTCTACCTGTTGAACGAATTCGCCGG
CCAGAGTACTATCATCTTCACGAGGACGGTGAACGAGACGCAGAGACTTG
CGTTCTTGCTTCGTGCGCTTGGCTTCGGCGCTATCCCGCTGCATGGACAG
CTTTCACAGTCTGCTCGTCTCGGTGCGCTGGGCAAGTTCCGTGCTCGTAG
TCGGAATATTCTTGTCGCGACGGATGTGGCTGCTCGTGGTTTGGATATTC
CGTCCGTTGATGTTGTGCTTAACTTTGATTTGCCGGGTGGTATGTATACC
CGGTCTTCTGCTATGGGAGTATTATTGGAGTCGGCTAATGTTTTTATGTA
TTAGATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCGTGCTGG
AAAGAGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTGAGGTTT
GGCTGAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATACGACTGC
CCTAAGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGCGCAACG
GCAGGCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAAGCAGGG
GCAAGAAGTTCGGTGGGAAGCGTTCCCGGGATGAGATGGATCAAGAGGAG
GGTTAG back to topCoding sequence (CDS) from alignment at An18:1183169..1184724+ >CBS51388_011083-T1 ID=CBS51388_011083-T1|Name=CBS51388_011083-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4212bp|location=Sequence derived from alignment at An18:1183169..1184724+ (Aspergillus niger CBS 513.88)
ATGCCTGGAGTCAAGAAGCGCAAGGTCGCCCGTGAGGCACCTGCGCCTGC
GCCCGCACAAGAGAGCGATGTCGAATCTTCCACCCCAGAGCAAACGCAAG
AACCAGAAGCACAAGAGCAAGAACAAGAAGAGGGACAGTCCAAGACATTC
AAGGAACTAGGAATCATCGAACAGCTATGCGAGGCTTGCGAGACCATGGG
CTACAAAGCACCTACACCTATTCAGCGGGAGTCGATTCCTCTGGCTCTTA
AAGGCCGTGATTTGATCGGTCTTGCAGAGACCGGAAGTGGAAAGACGGCA
GCGTTTGCTCTTCCCATCCTCCAAGCCTTGATGGAAAAGCCCCAACCCTT
CTTCGGCCTCGTCCTCGCCCCAACCCGAGAACTCGCCTACCAGATCTCCA
AATCTTTCGAGTCCCTAGGCGCCAGCATGGGTGTGCGAAGCTGCGTCATC
GTCGGTGGCATGGACATGGTCTCTCAGTCAATTTCCCTCGGCAAAAAGCC
CCATATCATCGTGGCCACCCCTGGTCGTCTTCTGGACCACCTCGAGAACA
CCAAGGGCTTCTCCCTCCGCAACCTGAAGTACCTGGTGATGGACGAAGCG
GATCGACTTCTTGACATGGACTTCGGACCCCTCCTCGACAAGATCCTGAA
AGTCCTGCCCCGTGAGCGCCGCACATTCCTCTTCTCTGCGACGATGAGCT
CAAAGGTCGAATCCCTCCAACGTGCCTCCCTCTCCAATCCGCTCCGTGTC
TCTGTCTCCACAAGCAAATACCAGACCGTCTCGACTCTCCTCCAATCTTA
CCTCTTCATTCCCCAGAAGCACAAGGACCTGTACCTTGTCTACCTGTTGA
ACGAATTCGCCGGCCAGAGTACTATCATCTTCACGAGGACGGTGAACGAG
ACGCAGAGACTTGCGTTCTTGCTTCGTGCGCTTGGCTTCGGCGCTATCCC
GCTGCATGGACAGCTTTCACAGTCTGCTCGTCTCGGTGCGCTGGGCAAGT
TCCGTGCTCGTAGTCGGAATATTCTTGTCGCGACGGATGTGGCTGCTCGT
GGTTTGGATATTCCGTCCGTTGATGTTGTGCTTAACTTTGATTTGCCGGG
TGATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCGTGCTGGAA
AGAGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTGAGGTTTGG
CTGAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATACGACTGCCC
TAAGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGCGCAACGGC
AGGCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAAGCAGGGGC
AAGAAGTTCGGTGGGAAGCGTTCCCGGGATGAGATGGATCAAGAGGAGGG
TTAGATGCCTGGAGTCAAGAAGCGCAAGGTCGCCCGTGAGGCACCTGCGC
CTGCGCCCGCACAAGAGAGCGATGTCGAATCTTCCACCCCAGAGCAAACG
CAAGAACCAGAAGCACAAGAGCAAGAACAAGAAGAGGGACAGTCCAAGAC
ATTCAAGGAACTAGGAATCATCGAACAGCTATGCGAGGCTTGCGAGACCA
TGGGCTACAAAGCACCTACACCTATTCAGCGGGAGTCGATTCCTCTGGCT
CTTAAAGGCCGTGATTTGATCGGTCTTGCAGAGACCGGAAGTGGAAAGAC
GGCAGCGTTTGCTCTTCCCATCCTCCAAGCCTTGATGGAAAAGCCCCAAC
CCTTCTTCGGCCTCGTCCTCGCCCCAACCCGAGAACTCGCCTACCAGATC
TCCAAATCTTTCGAGTCCCTAGGCGCCAGCATGGGTGTGCGAAGCTGCGT
CATCGTCGGTGGCATGGACATGGTCTCTCAGTCAATTTCCCTCGGCAAAA
AGCCCCATATCATCGTGGCCACCCCTGGTCGTCTTCTGGACCACCTCGAG
AACACCAAGGGCTTCTCCCTCCGCAACCTGAAGTACCTGGTGATGGACGA
AGCGGATCGACTTCTTGACATGGACTTCGGACCCCTCCTCGACAAGATCC
TGAAAGTCCTGCCCCGTGAGCGCCGCACATTCCTCTTCTCTGCGACGATG
AGCTCAAAGGTCGAATCCCTCCAACGTGCCTCCCTCTCCAATCCGCTCCG
TGTCTCTGTCTCCACAAGCAAATACCAGACCGTCTCGACTCTCCTCCAAT
CTTACCTCTTCATTCCCCAGAAGCACAAGGACCTGTACCTTGTCTACCTG
TTGAACGAATTCGCCGGCCAGAGTACTATCATCTTCACGAGGACGGTGAA
CGAGACGCAGAGACTTGCGTTCTTGCTTCGTGCGCTTGGCTTCGGCGCTA
TCCCGCTGCATGGACAGCTTTCACAGTCTGCTCGTCTCGGTGCGCTGGGC
AAGTTCCGTGCTCGTAGTCGGAATATTCTTGTCGCGACGGATGTGGCTGC
TCGTGGTTTGGATATTCCGTCCGTTGATGTTGTGCTTAACTTTGATTTGC
CGGGTGATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCGTGCT
GGAAAGAGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTGAGGT
TTGGCTGAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATACGACT
GCCCTAAGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGCGCAA
CGGCAGGCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAAGCAG
GGGCAAGAAGTTCGGTGGGAAGCGTTCCCGGGATGAGATGGATCAAGAGG
AGGGTTAGATGCCTGGAGTCAAGAAGCGCAAGGTCGCCCGTGAGGCACCT
GCGCCTGCGCCCGCACAAGAGAGCGATGTCGAATCTTCCACCCCAGAGCA
AACGCAAGAACCAGAAGCACAAGAGCAAGAACAAGAAGAGGGACAGTCCA
AGACATTCAAGGAACTAGGAATCATCGAACAGCTATGCGAGGCTTGCGAG
ACCATGGGCTACAAAGCACCTACACCTATTCAGCGGGAGTCGATTCCTCT
GGCTCTTAAAGGCCGTGATTTGATCGGTCTTGCAGAGACCGGAAGTGGAA
AGACGGCAGCGTTTGCTCTTCCCATCCTCCAAGCCTTGATGGAAAAGCCC
CAACCCTTCTTCGGCCTCGTCCTCGCCCCAACCCGAGAACTCGCCTACCA
GATCTCCAAATCTTTCGAGTCCCTAGGCGCCAGCATGGGTGTGCGAAGCT
GCGTCATCGTCGGTGGCATGGACATGGTCTCTCAGTCAATTTCCCTCGGC
AAAAAGCCCCATATCATCGTGGCCACCCCTGGTCGTCTTCTGGACCACCT
CGAGAACACCAAGGGCTTCTCCCTCCGCAACCTGAAGTACCTGGTGATGG
ACGAAGCGGATCGACTTCTTGACATGGACTTCGGACCCCTCCTCGACAAG
ATCCTGAAAGTCCTGCCCCGTGAGCGCCGCACATTCCTCTTCTCTGCGAC
GATGAGCTCAAAGGTCGAATCCCTCCAACGTGCCTCCCTCTCCAATCCGC
TCCGTGTCTCTGTCTCCACAAGCAAATACCAGACCGTCTCGACTCTCCTC
CAATCTTACCTCTTCATTCCCCAGAAGCACAAGGACCTGTACCTTGTCTA
CCTGTTGAACGAATTCGCCGGCCAGAGTACTATCATCTTCACGAGGACGG
TGAACGAGACGCAGAGACTTGCGTTCTTGCTTCGTGCGCTTGGCTTCGGC
GCTATCCCGCTGCATGGACAGCTTTCACAGTCTGCTCGTCTCGGTGCGCT
GGGCAAGTTCCGTGCTCGTAGTCGGAATATTCTTGTCGCGACGGATGTGG
CTGCTCGTGGTTTGGATATTCCGTCCGTTGATGTTGTGCTTAACTTTGAT
TTGCCGGGTGATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCG
TGCTGGAAAGAGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTG
AGGTTTGGCTGAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATAC
GACTGCCCTAAGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGC
GCAACGGCAGGCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAA
GCAGGGGCAAGAAGTTCGGTGGGAAGCGTTCCCGGGATGAGATGGATCAA
GAGGAGGGTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR014014 |
| DBxref | InterPro:IPR000629 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR014001 |
| DBxref | InterPro:IPR001650 |
| DBxref | PFAM:PF04851 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF00270 |
| Product | ribosomal RNA processing protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An18 | supercontig | An18:1183169..1184724 + |
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