You are here

Home

CBS51388_011164-T1, CBS51388_011164-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_011164-T1
Unique NameCBS51388_011164-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An18:1421636..1422686+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_011164-T1 ID=CBS51388_011164-T1|Name=CBS51388_011164-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1051bp|location=Sequence derived from alignment at An18:1421636..1422686+ (Aspergillus niger CBS 513.88)
ATGGCTCCTTCAAAGTGGGGTATGTCCTCTTTTGGAGATTTTTGTGGCCC
TCGCCCGCAATAGGGACATACATTGCGGGACAACATGGCGAATCATTCAC
GATACTGACGGCTTCTTTCAGATGACGAAGAAGAGAGTGTCTCTCCCCCT
CCTGTGGTTGCCCGCCGCAAGTTCGACGACGAGGAAGAGGAAGATGTGAG
TTTTTGCCGCCCCTCCCCCCTCCTTTTCCATTTTTGCCTCACAATTTGCC
CCGCGCTGTTTCTCTTGGCCTCAGTCGCTGAAAACTCGCGCCCCCCCCCC
CCATCATTTTTTCCCCCGTCCACGATCTGACCGAATGAACTAGGTCCTCG
ACTCCTGGGACGCCGCCGAAGATTCCGAAGTAGAGCGTGAGAAGGCCGCC
AAGGCAGCGGAGGCCAAGGCTAAGGCGGAAGCCGAAGCCGCCGCCAACAA
GAAGAGCAAGGCACAGCGGATACAGGAAAAGAAGGCCCAGCGGAAGGCAG
ATGCCGATGCTGAGGATTCGGACGACAGCGACGAGGACGAGGCCGAGCGG
AGAGCCCGTCTCCGCAAGACGGAGAAGGACGCTGACCTTAAGCACGCCGA
GGACCTGTTCGGCGACATCGACCTGAACCGTATGCGCAACCGCAGCGCCC
CCAAGGCCGTTGTCATCAGTGACGGGACCGACCCGACCCAGGCCGTCGAT
CTGTCGGCTATGCCTCTCTTCAAGCCCGCCACCAAGGACCAGTTCACCCG
CGTTACGACCACCCTTATCCCTCTGTTGACGACCCAGTCGAAGAAGCCCC
AGTATGCTCTGTGGGCGCAGGACTTCATCAAGCAGCTCGTCAAGGACCTG
CCCAGCGGTGATGTCAAAAAGATCGCTTCCTCGCTGACTACTCTCAGCAA
TGAGAAGATGAAGGAGGAGCGTGCTGCCGATAAGGGTAACAAGAAGACCA
AGGCGGCCAAGACCAAGGTCTCTCTGGTCACCTCTAGAGAGAACAAGATT
GAAACCAACTCTTATGATGATGATGGGTTGGATGACGATGACTTCATGTG
A
back to top

Coding sequence (CDS) from alignment at An18:1421636..1422686+

>CBS51388_011164-T1 ID=CBS51388_011164-T1|Name=CBS51388_011164-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2403bp|location=Sequence derived from alignment at An18:1421636..1422686+ (Aspergillus niger CBS 513.88)
ATGGCTCCTTCAAAGTGGGATGACGAAGAAGAGAGTGTCTCTCCCCCTCC
TGTGGTTGCCCGCCGCAAGTTCGACGACGAGGAAGAGGAAGATGTCCTCG
ACTCCTGGGACGCCGCCGAAGATTCCGAAGTAGAGCGTGAGAAGGCCGCC
AAGGCAGCGGAGGCCAAGGCTAAGGCGGAAGCCGAAGCCGCCGCCAACAA
GAAGAGCAAGGCACAGCGGATACAGGAAAAGAAGGCCCAGCGGAAGGCAG
ATGCCGATGCTGAGGATTCGGACGACAGCGACGAGGACGAGGCCGAGCGG
AGAGCCCGTCTCCGCAAGACGGAGAAGGACGCTGACCTTAAGCACGCCGA
GGACCTGTTCGGCGACATCGACCTGAACCGTATGCGCAACCGCAGCGCCC
CCAAGGCCGTTGTCATCAGTGACGGGACCGACCCGACCCAGGCCGTCGAT
CTGTCGGCTATGCCTCTCTTCAAGCCCGCCACCAAGGACCAGTTCACCCG
CGTTACGACCACCCTTATCCCTCTGTTGACGACCCAGTCGAAGAAGCCCC
AGTATGCTCTGTGGGCGCAGGACTTCATCAAGCAGCTCGTCAAGGACCTG
CCCAGCGGTGATGTCAAAAAGATCGCTTCCTCGCTGACTACTCTCAGCAA
TGAGAAGATGAAGGAGGAGCGTGCTGCCGATAAGGGTAACAAGAAGACCA
AGGCGGCCAAGACCAAGGTCTCTCTGGTCACCTCTAGAGAGAACAAGATT
GAAACCAACTCTTATGATGATGATGGGTTGGATGACGATGACTTCATGTG
AATGGCTCCTTCAAAGTGGGATGACGAAGAAGAGAGTGTCTCTCCCCCTC
CTGTGGTTGCCCGCCGCAAGTTCGACGACGAGGAAGAGGAAGATGTCCTC
GACTCCTGGGACGCCGCCGAAGATTCCGAAGTAGAGCGTGAGAAGGCCGC
CAAGGCAGCGGAGGCCAAGGCTAAGGCGGAAGCCGAAGCCGCCGCCAACA
AGAAGAGCAAGGCACAGCGGATACAGGAAAAGAAGGCCCAGCGGAAGGCA
GATGCCGATGCTGAGGATTCGGACGACAGCGACGAGGACGAGGCCGAGCG
GAGAGCCCGTCTCCGCAAGACGGAGAAGGACGCTGACCTTAAGCACGCCG
AGGACCTGTTCGGCGACATCGACCTGAACCGTATGCGCAACCGCAGCGCC
CCCAAGGCCGTTGTCATCAGTGACGGGACCGACCCGACCCAGGCCGTCGA
TCTGTCGGCTATGCCTCTCTTCAAGCCCGCCACCAAGGACCAGTTCACCC
GCGTTACGACCACCCTTATCCCTCTGTTGACGACCCAGTCGAAGAAGCCC
CAGTATGCTCTGTGGGCGCAGGACTTCATCAAGCAGCTCGTCAAGGACCT
GCCCAGCGGTGATGTCAAAAAGATCGCTTCCTCGCTGACTACTCTCAGCA
ATGAGAAGATGAAGGAGGAGCGTGCTGCCGATAAGGGTAACAAGAAGACC
AAGGCGGCCAAGACCAAGGTCTCTCTGGTCACCTCTAGAGAGAACAAGAT
TGAAACCAACTCTTATGATGATGATGGGTTGGATGACGATGACTTCATGT
GAATGGCTCCTTCAAAGTGGGATGACGAAGAAGAGAGTGTCTCTCCCCCT
CCTGTGGTTGCCCGCCGCAAGTTCGACGACGAGGAAGAGGAAGATGTCCT
CGACTCCTGGGACGCCGCCGAAGATTCCGAAGTAGAGCGTGAGAAGGCCG
CCAAGGCAGCGGAGGCCAAGGCTAAGGCGGAAGCCGAAGCCGCCGCCAAC
AAGAAGAGCAAGGCACAGCGGATACAGGAAAAGAAGGCCCAGCGGAAGGC
AGATGCCGATGCTGAGGATTCGGACGACAGCGACGAGGACGAGGCCGAGC
GGAGAGCCCGTCTCCGCAAGACGGAGAAGGACGCTGACCTTAAGCACGCC
GAGGACCTGTTCGGCGACATCGACCTGAACCGTATGCGCAACCGCAGCGC
CCCCAAGGCCGTTGTCATCAGTGACGGGACCGACCCGACCCAGGCCGTCG
ATCTGTCGGCTATGCCTCTCTTCAAGCCCGCCACCAAGGACCAGTTCACC
CGCGTTACGACCACCCTTATCCCTCTGTTGACGACCCAGTCGAAGAAGCC
CCAGTATGCTCTGTGGGCGCAGGACTTCATCAAGCAGCTCGTCAAGGACC
TGCCCAGCGGTGATGTCAAAAAGATCGCTTCCTCGCTGACTACTCTCAGC
AATGAGAAGATGAAGGAGGAGCGTGCTGCCGATAAGGGTAACAAGAAGAC
CAAGGCGGCCAAGACCAAGGTCTCTCTGGTCACCTCTAGAGAGAACAAGA
TTGAAACCAACTCTTATGATGATGATGGGTTGGATGACGATGACTTCATG
TGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
HCR1CBS51388_011164Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_011164-T1.exon1CBS51388_011164-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_011164-T1.exon2CBS51388_011164-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_011164-T1.exon3CBS51388_011164-T1.exon3Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_011164-T1.cdsCBS51388_011164-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_011164-T1CBS51388_011164-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR013906
DBxrefInterPro:IPR023194
DBxrefPFAM:PF08597
ProductTranslation initiation factor 3 subunit J component
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An18supercontigAn18:1421636..1422686 +
Powered by Drupal