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CAN33_0440-T1, CAN33_0440-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_0440-T1
Unique NameCAN33_0440-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000004.1:202920..203648-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_0440-T1 ID=CAN33_0440-T1|Name=CAN33_0440-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=729bp|location=Sequence derived from alignment at NKJJ01000004.1:202920..203648- (Aspergillus niger FDAARGOS_311)
ATGAACCAGGAAGCTCGCAATATCAGCATTATCCAGGGCAACAACATCGC
CTTTATCAAAACGTATCCTGGAGGGTCTGGTTACGTCAAAGACGTCACCT
TCGAAAATTTCCGCTCTTTGAACAGCCTGTACGGATTGGACATCAACCAA
TACTGGCAAAACACATGGGAGCCTGATACCGGTTCCGTGACATTGAGCAA
CCTTGTCTTCAAGAACTTCTCAGGTAATCTCGGCTCGTGTATCCAGTGAA
TGCAGCCCTCGTACTGATGCACAAACATAGGATCGGTTGCCGATGGAGCA
CTCCGCCCGCCATTGTATCTGTTTGCAAGTGACTTGACATTTGCAACGAA
CGTCACCGTGGAGGAATTCTCTGTCTGGACTGAGACTGGTACAACAGTCG
TCAACAAGATCAGCAATATCTTCGGCACTGGGGATGATAGCTATGAAGAG
AATGATGGCATTGAGAGCCTCCAATCTGGAGAGTCGCCGTATACGTATAC
TAGCACCTATACTATTACGGCTTCTCCCACCAATTGGCAAGCTCCATCAA
CCCCAACCTGGGCTTTACCGAGCACTGGATATGGAAGTAAGTTCAACGAG
AATTGTTCTGGTTATTTTTACATAGCTAACTTATCTACAGCTGCGTCACC
TATTCCAGTCTATACTCCCGCACCTCTTTGGCGCCCTGGTGGAATTGACT
ATAACCTCCATTATTGGGGAAGCTTTTAG
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Coding sequence (CDS) from alignment at NKJJ01000004.1:202920..203648-

>CAN33_0440-T1 ID=CAN33_0440-T1|Name=CAN33_0440-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1854bp|location=Sequence derived from alignment at NKJJ01000004.1:202920..203648- (Aspergillus niger FDAARGOS_311)
CTGCGTCACCTATTCCAGTCTATACTCCCGCACCTCTTTGGCGCCCTGGT
GGAATTGACTATAACCTCCATTATTGGGGAAGCTTTTAGGATCGGTTGCC
GATGGAGCACTCCGCCCGCCATTGTATCTGTTTGCAAGTGACTTGACATT
TGCAACGAACGTCACCGTGGAGGAATTCTCTGTCTGGACTGAGACTGGTA
CAACAGTCGTCAACAAGATCAGCAATATCTTCGGCACTGGGGATGATAGC
TATGAAGAGAATGATGGCATTGAGAGCCTCCAATCTGGAGAGTCGCCGTA
TACGTATACTAGCACCTATACTATTACGGCTTCTCCCACCAATTGGCAAG
CTCCATCAACCCCAACCTGGGCTTTACCGAGCACTGGATATGGAAATGAA
CCAGGAAGCTCGCAATATCAGCATTATCCAGGGCAACAACATCGCCTTTA
TCAAAACGTATCCTGGAGGGTCTGGTTACGTCAAAGACGTCACCTTCGAA
AATTTCCGCTCTTTGAACAGCCTGTACGGATTGGACATCAACCAATACTG
GCAAAACACATGGGAGCCTGATACCGGTTCCGTGACATTGAGCAACCTTG
TCTTCAAGAACTTCTCAGCTGCGTCACCTATTCCAGTCTATACTCCCGCA
CCTCTTTGGCGCCCTGGTGGAATTGACTATAACCTCCATTATTGGGGAAG
CTTTTAGGATCGGTTGCCGATGGAGCACTCCGCCCGCCATTGTATCTGTT
TGCAAGTGACTTGACATTTGCAACGAACGTCACCGTGGAGGAATTCTCTG
TCTGGACTGAGACTGGTACAACAGTCGTCAACAAGATCAGCAATATCTTC
GGCACTGGGGATGATAGCTATGAAGAGAATGATGGCATTGAGAGCCTCCA
ATCTGGAGAGTCGCCGTATACGTATACTAGCACCTATACTATTACGGCTT
CTCCCACCAATTGGCAAGCTCCATCAACCCCAACCTGGGCTTTACCGAGC
ACTGGATATGGAAATGAACCAGGAAGCTCGCAATATCAGCATTATCCAGG
GCAACAACATCGCCTTTATCAAAACGTATCCTGGAGGGTCTGGTTACGTC
AAAGACGTCACCTTCGAAAATTTCCGCTCTTTGAACAGCCTGTACGGATT
GGACATCAACCAATACTGGCAAAACACATGGGAGCCTGATACCGGTTCCG
TGACATTGAGCAACCTTGTCTTCAAGAACTTCTCAGCTGCGTCACCTATT
CCAGTCTATACTCCCGCACCTCTTTGGCGCCCTGGTGGAATTGACTATAA
CCTCCATTATTGGGGAAGCTTTTAGGATCGGTTGCCGATGGAGCACTCCG
CCCGCCATTGTATCTGTTTGCAAGTGACTTGACATTTGCAACGAACGTCA
CCGTGGAGGAATTCTCTGTCTGGACTGAGACTGGTACAACAGTCGTCAAC
AAGATCAGCAATATCTTCGGCACTGGGGATGATAGCTATGAAGAGAATGA
TGGCATTGAGAGCCTCCAATCTGGAGAGTCGCCGTATACGTATACTAGCA
CCTATACTATTACGGCTTCTCCCACCAATTGGCAAGCTCCATCAACCCCA
ACCTGGGCTTTACCGAGCACTGGATATGGAAATGAACCAGGAAGCTCGCA
ATATCAGCATTATCCAGGGCAACAACATCGCCTTTATCAAAACGTATCCT
GGAGGGTCTGGTTACGTCAAAGACGTCACCTTCGAAAATTTCCGCTCTTT
GAACAGCCTGTACGGATTGGACATCAACCAATACTGGCAAAACACATGGG
AGCCTGATACCGGTTCCGTGACATTGAGCAACCTTGTCTTCAAGAACTTC
TCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_0440CAN33_0440Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_0440-T1CAN33_0440-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_0440-T1.cdsCAN33_0440-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_0440-T1.exon3CAN33_0440-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_0440-T1.exon2CAN33_0440-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_0440-T1.exon1CAN33_0440-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteantiSMASH:Cluster_10000041.4
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
ProductGlycosyl hydrolases family 28 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000004.1supercontigNKJJ01000004.1:202920..203648 -
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