You are here

Home

CAN33_12095-T1, CAN33_12095-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_12095-T1
Unique NameCAN33_12095-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000009.1:1041068..1042137+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_12095-T1 ID=CAN33_12095-T1|Name=CAN33_12095-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1070bp|location=Sequence derived from alignment at NKJJ01000009.1:1041068..1042137+ (Aspergillus niger FDAARGOS_311)
ATGTCCTCCCCAATCAAAACGGTCGGCGTGATCGGCGCAGGCGTGATCGG
AGCCAGCTGGACAGCACTCTTCCTTGCCAAGGGCCTCCAAGTGATTGTAA
CAGACCCAGCGCCAGGAGCTGGGGCAAAGCTGCGTGGTTACTTGCAGGAG
TATTGCTCCGCAGTACCTAATGCTATGGTTGCTCCTGCCGCTTGTCTGAA
GAATTACACATTCGTCAAGGACATTGAGCCTTACCTCGGAAGCCTAGACA
TGATTCAAGAAGTCAGTGGCCGGTCATCCTTAGAGCTCCTCTGCAGTTCG
TCATGCATGCTAACTATTATGATAGAATGGGCCAGAAAGACTAGACTTCA
AACGCCGTCTATTCGCGCACTTGGACGCAAAGACCCCTTCCCATATCCTC
ATCGCATCCTCCTCCTCCGGCCTTCCGTCGTCAGAATTTGTCACAGAATG
CACAAATAACCCATCTCGAATCCTCATCGGTCACCCTTTCAACCCTCCCC
ACTTAGTACCTCTGGTCGAGGTCGTGCCTCATCCAGGAACAAGCCAAGAC
TATGTGGCGGCTGCATACCAATTCTACAAGGGTCTAGACAAGGATCCGGT
GATTGTGAATCAAGAAACTCCTGGCTTTATCGCCAACCGGTTACAAGCCG
CAATGTGTGCCGAGGCATACAGCCTCGTTACACGAAGGATTGTCTCTGCA
GAAGACCTGGGTGAGCATTAATCTTCCTCCTGTTGCAATATGGAAGAACT
TCTAATGGCGTATAGACAAAACTGTCACTTCCGGCCTCGGCCTGCGGTGG
GCGCTGACAGGGCCAATTATGACGAATACCCTCGGCGGCGGGGGAGACTT
CACCCATTTTATGGATCATTTGGGCCCGGCGTTGAAGTCGTGGGTCGACG
ATATGGAACAGAATAAATTTGACTTGGGATCCGAGGAGCAAGTTGATGGC
TTGAAGAAGAACGTCAATGGGTGGACATCGCAAGTCGACCTGAAGAAGGT
TGAGGGGGATCGTGATGTGCTGTTGACTGATTTGGTTAAGCGTAAACTGG
ACCAAACGGAGAATCAATAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000009.1:1041068..1042137+

>CAN33_12095-T1 ID=CAN33_12095-T1|Name=CAN33_12095-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2853bp|location=Sequence derived from alignment at NKJJ01000009.1:1041068..1042137+ (Aspergillus niger FDAARGOS_311)
ATGTCCTCCCCAATCAAAACGGTCGGCGTGATCGGCGCAGGCGTGATCGG
AGCCAGCTGGACAGCACTCTTCCTTGCCAAGGGCCTCCAAGTGATTGTAA
CAGACCCAGCGCCAGGAGCTGGGGCAAAGCTGCGTGGTTACTTGCAGGAG
TATTGCTCCGCAGTACCTAATGCTATGGTTGCTCCTGCCGCTTGTCTGAA
GAATTACACATTCGTCAAGGACATTGAGCCTTACCTCGGAAGCCTAGACA
TGATTCAAGAAAATGGGCCAGAAAGACTAGACTTCAAACGCCGTCTATTC
GCGCACTTGGACGCAAAGACCCCTTCCCATATCCTCATCGCATCCTCCTC
CTCCGGCCTTCCGTCGTCAGAATTTGTCACAGAATGCACAAATAACCCAT
CTCGAATCCTCATCGGTCACCCTTTCAACCCTCCCCACTTAGTACCTCTG
GTCGAGGTCGTGCCTCATCCAGGAACAAGCCAAGACTATGTGGCGGCTGC
ATACCAATTCTACAAGGGTCTAGACAAGGATCCGGTGATTGTGAATCAAG
AAACTCCTGGCTTTATCGCCAACCGGTTACAAGCCGCAATGTGTGCCGAG
GCATACAGCCTCGTTACACGAAGGATTGTCTCTGCAGAAGACCTGGACAA
AACTGTCACTTCCGGCCTCGGCCTGCGGTGGGCGCTGACAGGGCCAATTA
TGACGAATACCCTCGGCGGCGGGGGAGACTTCACCCATTTTATGGATCAT
TTGGGCCCGGCGTTGAAGTCGTGGGTCGACGATATGGAACAGAATAAATT
TGACTTGGGATCCGAGGAGCAAGTTGATGGCTTGAAGAAGAACGTCAATG
GGTGGACATCGCAAGTCGACCTGAAGAAGGTTGAGGGGGATCGTGATGTG
CTGTTGACTGATTTGGTTAAGCGTAAACTGGACCAAACGGAGAATCAATA
GATGTCCTCCCCAATCAAAACGGTCGGCGTGATCGGCGCAGGCGTGATCG
GAGCCAGCTGGACAGCACTCTTCCTTGCCAAGGGCCTCCAAGTGATTGTA
ACAGACCCAGCGCCAGGAGCTGGGGCAAAGCTGCGTGGTTACTTGCAGGA
GTATTGCTCCGCAGTACCTAATGCTATGGTTGCTCCTGCCGCTTGTCTGA
AGAATTACACATTCGTCAAGGACATTGAGCCTTACCTCGGAAGCCTAGAC
ATGATTCAAGAAAATGGGCCAGAAAGACTAGACTTCAAACGCCGTCTATT
CGCGCACTTGGACGCAAAGACCCCTTCCCATATCCTCATCGCATCCTCCT
CCTCCGGCCTTCCGTCGTCAGAATTTGTCACAGAATGCACAAATAACCCA
TCTCGAATCCTCATCGGTCACCCTTTCAACCCTCCCCACTTAGTACCTCT
GGTCGAGGTCGTGCCTCATCCAGGAACAAGCCAAGACTATGTGGCGGCTG
CATACCAATTCTACAAGGGTCTAGACAAGGATCCGGTGATTGTGAATCAA
GAAACTCCTGGCTTTATCGCCAACCGGTTACAAGCCGCAATGTGTGCCGA
GGCATACAGCCTCGTTACACGAAGGATTGTCTCTGCAGAAGACCTGGACA
AAACTGTCACTTCCGGCCTCGGCCTGCGGTGGGCGCTGACAGGGCCAATT
ATGACGAATACCCTCGGCGGCGGGGGAGACTTCACCCATTTTATGGATCA
TTTGGGCCCGGCGTTGAAGTCGTGGGTCGACGATATGGAACAGAATAAAT
TTGACTTGGGATCCGAGGAGCAAGTTGATGGCTTGAAGAAGAACGTCAAT
GGGTGGACATCGCAAGTCGACCTGAAGAAGGTTGAGGGGGATCGTGATGT
GCTGTTGACTGATTTGGTTAAGCGTAAACTGGACCAAACGGAGAATCAAT
AGATGTCCTCCCCAATCAAAACGGTCGGCGTGATCGGCGCAGGCGTGATC
GGAGCCAGCTGGACAGCACTCTTCCTTGCCAAGGGCCTCCAAGTGATTGT
AACAGACCCAGCGCCAGGAGCTGGGGCAAAGCTGCGTGGTTACTTGCAGG
AGTATTGCTCCGCAGTACCTAATGCTATGGTTGCTCCTGCCGCTTGTCTG
AAGAATTACACATTCGTCAAGGACATTGAGCCTTACCTCGGAAGCCTAGA
CATGATTCAAGAAAATGGGCCAGAAAGACTAGACTTCAAACGCCGTCTAT
TCGCGCACTTGGACGCAAAGACCCCTTCCCATATCCTCATCGCATCCTCC
TCCTCCGGCCTTCCGTCGTCAGAATTTGTCACAGAATGCACAAATAACCC
ATCTCGAATCCTCATCGGTCACCCTTTCAACCCTCCCCACTTAGTACCTC
TGGTCGAGGTCGTGCCTCATCCAGGAACAAGCCAAGACTATGTGGCGGCT
GCATACCAATTCTACAAGGGTCTAGACAAGGATCCGGTGATTGTGAATCA
AGAAACTCCTGGCTTTATCGCCAACCGGTTACAAGCCGCAATGTGTGCCG
AGGCATACAGCCTCGTTACACGAAGGATTGTCTCTGCAGAAGACCTGGAC
AAAACTGTCACTTCCGGCCTCGGCCTGCGGTGGGCGCTGACAGGGCCAAT
TATGACGAATACCCTCGGCGGCGGGGGAGACTTCACCCATTTTATGGATC
ATTTGGGCCCGGCGTTGAAGTCGTGGGTCGACGATATGGAACAGAATAAA
TTTGACTTGGGATCCGAGGAGCAAGTTGATGGCTTGAAGAAGAACGTCAA
TGGGTGGACATCGCAAGTCGACCTGAAGAAGGTTGAGGGGGATCGTGATG
TGCTGTTGACTGATTTGGTTAAGCGTAAACTGGACCAAACGGAGAATCAA
TAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006631fatty acid metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:00038573-hydroxyacyl-CoA dehydrogenase activity
GO:0016491oxidoreductase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_12095CAN33_12095Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12095-T1.exon1CAN33_12095-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_12095-T1.exon2CAN33_12095-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_12095-T1.exon3CAN33_12095-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12095-T1.cdsCAN33_12095-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12095-T1CAN33_12095-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR008927
DBxrefInterPro:IPR006108
DBxrefInterPro:IPR006176
DBxrefInterPro:IPR013328
DBxrefPFAM:PF02737
DBxrefPFAM:PF00725
Product3-hydroxyacyl-CoA dehydrogenase NAD binding domain family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000009.1supercontigNKJJ01000009.1:1041068..1042137 +
Powered by Drupal