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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000010.1:379998..380667- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_12780-T1 ID=CAN33_12780-T1|Name=CAN33_12780-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=670bp|location=Sequence derived from alignment at NKJJ01000010.1:379998..380667- (Aspergillus niger FDAARGOS_311)
ATGCCTCAAGCCCAGCCCGAGTTGAAGAAGGTATGATATTCGCGATTAAT
ACCCCGCCAAACTTTCCCCGATACAGAGCACCGAAGCTAACATTGCGGTT
TTCCAACAGTACATGGAAAAGCGGGTATTCTGCCAACTGAACGGCAACCG
CAAAGTCATTGGTATCCTGCGAGGCTATGATGTACGTCGCGCTTGTGCCC
CCTGGATTTCTACTTTCCTGCCTGCTGTGTTGCTGTTATACGGGTTGATA
TGCCTTGGATGGGGTCGAAGATTGAGATGTTCTTGGGTTCAATCCATCGA
GTGAAAGAGGGGGCGGGGAGAGTGTGTGTATGTGTGTATAGGTTACTGAC
GTCTGCGCTTGTCTATACAGGTGTTCATGAACATTGTCCTTGACGAGGCT
TTCGAGGAGAAGCAGGGTGGTGAGAAGGTTGCTATCGGCATGATTGTATG
TGGCTAGTCCCATTCCCGGACGTCTACGTTTGGTCTGCAAACTGGGAGGG
GCAGGAAGCTAATGGCTATCTATTCGTCTTAATAGGTCATTCGCGGTAAC
TCGGTTGTTATGCTCGAGGTCAGTATCACCTGCCATAGGACTACGATTGA
TGGCGTGCCTTATCAAGAGACTAACCTTTTGTACTTAAAATAGGCCCTGG
AACGTATCAGCGACAAATAA back to topCoding sequence (CDS) from alignment at NKJJ01000010.1:379998..380667- >CAN33_12780-T1 ID=CAN33_12780-T1|Name=CAN33_12780-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1185bp|location=Sequence derived from alignment at NKJJ01000010.1:379998..380667- (Aspergillus niger FDAARGOS_311)
GCCCTGGAACGTATCAGCGACAAATAAGTCATTCGCGGTAACTCGGTTGT
TATGCTCGAGGTGTTCATGAACATTGTCCTTGACGAGGCTTTCGAGGAGA
AGCAGGGTGGTGAGAAGGTTGCTATCGGCATGATTTACATGGAAAAGCGG
GTATTCTGCCAACTGAACGGCAACCGCAAAGTCATTGGTATCCTGCGAGG
CTATGATATGCCTCAAGCCCAGCCCGAGTTGAAGAAGGCCCTGGAACGTA
TCAGCGACAAATAAGTCATTCGCGGTAACTCGGTTGTTATGCTCGAGGTG
TTCATGAACATTGTCCTTGACGAGGCTTTCGAGGAGAAGCAGGGTGGTGA
GAAGGTTGCTATCGGCATGATTTACATGGAAAAGCGGGTATTCTGCCAAC
TGAACGGCAACCGCAAAGTCATTGGTATCCTGCGAGGCTATGATATGCCT
CAAGCCCAGCCCGAGTTGAAGAAGGCCCTGGAACGTATCAGCGACAAATA
AGTCATTCGCGGTAACTCGGTTGTTATGCTCGAGGTGTTCATGAACATTG
TCCTTGACGAGGCTTTCGAGGAGAAGCAGGGTGGTGAGAAGGTTGCTATC
GGCATGATTTACATGGAAAAGCGGGTATTCTGCCAACTGAACGGCAACCG
CAAAGTCATTGGTATCCTGCGAGGCTATGATATGCCTCAAGCCCAGCCCG
AGTTGAAGAAGGCCCTGGAACGTATCAGCGACAAATAAGTCATTCGCGGT
AACTCGGTTGTTATGCTCGAGGTGTTCATGAACATTGTCCTTGACGAGGC
TTTCGAGGAGAAGCAGGGTGGTGAGAAGGTTGCTATCGGCATGATTTACA
TGGAAAAGCGGGTATTCTGCCAACTGAACGGCAACCGCAAAGTCATTGGT
ATCCTGCGAGGCTATGATATGCCTCAAGCCCAGCCCGAGTTGAAGAAGGC
CCTGGAACGTATCAGCGACAAATAAGTCATTCGCGGTAACTCGGTTGTTA
TGCTCGAGGTGTTCATGAACATTGTCCTTGACGAGGCTTTCGAGGAGAAG
CAGGGTGGTGAGAAGGTTGCTATCGGCATGATTTACATGGAAAAGCGGGT
ATTCTGCCAACTGAACGGCAACCGCAAAGTCATTGGTATCCTGCGAGGCT
ATGATATGCCTCAAGCCCAGCCCGAGTTGAAGAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005681 | spliceosomal complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000387 | spliceosomal snRNP assembly |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR034098 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | Serine/threonine-protein kinase smg1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000010.1 | supercontig | NKJJ01000010.1:379998..380667 - |
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