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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000010.1:534040..535386- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_13020-T1 ID=CAN33_13020-T1|Name=CAN33_13020-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1347bp|location=Sequence derived from alignment at NKJJ01000010.1:534040..535386- (Aspergillus niger FDAARGOS_311)
ATGGTCCCCCAGGTCAAACAGGAGCCTGATTCCCAGACACCATACATCAA
ACCCGACCCATATATCAAACAGGATCCCGACAGCAAGGATACAGTACTCG
CTGATATCGACGATGAAGATCTATATGAGGATGCGGGCGATCTAGACTTC
TCGGCTGCGAACCAGAGCGTCTGGCTTTCACGGCTTCCCCGGTCACTATG
GGAACATTGGGCGCATTTGTCAAACAGCGCCGGCGATGACGACGAGGAGA
TTCAGATTGGGACAATGAGGATTGAGGGTACACAGAATGATCTCAAACGG
GTAGGTCTCTAAATGCGATGAACTTTGTCGAGGGACCTCGGTTTGTGTTA
CACACGGACTGACACTTGCGACCTTTTGCAGGTCAGTTTGCGCATAAACG
CACGAGAAGACAATCGCGATATTCCTAAAGACTATCTACTGCAACGGCAA
ACGATAACCTCAGAGAATGTTTCGCACTTGACGCAAAATACGTACCTTTT
CACGGAGAGGGACCTCCCGGGTCATGAGAATCGTATGGTGGTTTTTGGCG
AGGCGCGTTCGGCGCTCTATGAGTCGATGAAGCGGGATATGAGGAAGAAG
GAGCGCAAGAAGAAATGGGAGCCCTACGTCAGGAAAACGGTACCGAGTAT
GTACCATCTGTTACTGCGACAAAGGAGATCTTGCTCACATTGTAATAGAA
CAAACCGCTTTGGTGGGGAGCGTGAGTGAAGAGTTCAACTGCCTTCCGGT
TGAGAATGAGGAATTCCGGCGGTTGTCGGAGAAGAAGGCTCTGGAGGCAC
TCAAACCGAAGCGTGAGACTGTATTTATCGATAAGATTCCGGGTAAGATG
CTCCAGCCGCGGAATGCATTGCCCGGAGAGAAGGGTGCTTTTGTGGTAAG
TGTGCCTTTGCCGTGCTCATTAGTCCTACTTTACTTACCAAACACTTTTC
ATTCCAGCAAGCAACAAGGCCAGTCAAGGCCAAGGCCCAGGAGAACAAAA
CCACTCGTATGCCTCAAAACGAGCTGTTGGATCTTATCTACCAGTGCTTC
AGGGAATACAAGTACTGGCCATTTAAGAACCTCAAAGCGAGACTGCGACA
GCCCGAGGCTTATCTCAAACAAACTCTGGAAATGGTTGCGCATTTGGTTA
AAGCTGGTGACTTTGCTATGACCTGGGAGCTGAAGCCCGAAGCGAGGGAA
AGCAACTACGCCAATGCGATGTACAACGATGCTAAGGATGAACTCGCTCC
GGGAGACTACAACTTCGAGGACGGCTCTGAAGAGGAAGCCACGCCTTCCG
GTATGATGACAGATAATGACGAAGGACAGTTCGAGAACGTTGTCTAA back to topCoding sequence (CDS) from alignment at NKJJ01000010.1:534040..535386- >CAN33_13020-T1 ID=CAN33_13020-T1|Name=CAN33_13020-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4608bp|location=Sequence derived from alignment at NKJJ01000010.1:534040..535386- (Aspergillus niger FDAARGOS_311)
CAAGCAACAAGGCCAGTCAAGGCCAAGGCCCAGGAGAACAAAACCACTCG
TATGCCTCAAAACGAGCTGTTGGATCTTATCTACCAGTGCTTCAGGGAAT
ACAAGTACTGGCCATTTAAGAACCTCAAAGCGAGACTGCGACAGCCCGAG
GCTTATCTCAAACAAACTCTGGAAATGGTTGCGCATTTGGTTAAAGCTGG
TGACTTTGCTATGACCTGGGAGCTGAAGCCCGAAGCGAGGGAAAGCAACT
ACGCCAATGCGATGTACAACGATGCTAAGGATGAACTCGCTCCGGGAGAC
TACAACTTCGAGGACGGCTCTGAAGAGGAAGCCACGCCTTCCGGTATGAT
GACAGATAATGACGAAGGACAGTTCGAGAACGTTGTCTAAAACAAACCGC
TTTGGTGGGGAGCGTGAGTGAAGAGTTCAACTGCCTTCCGGTTGAGAATG
AGGAATTCCGGCGGTTGTCGGAGAAGAAGGCTCTGGAGGCACTCAAACCG
AAGCGTGAGACTGTATTTATCGATAAGATTCCGGGTAAGATGCTCCAGCC
GCGGAATGCATTGCCCGGAGAGAAGGGTGCTTTTGTGGTCAGTTTGCGCA
TAAACGCACGAGAAGACAATCGCGATATTCCTAAAGACTATCTACTGCAA
CGGCAAACGATAACCTCAGAGAATGTTTCGCACTTGACGCAAAATACGTA
CCTTTTCACGGAGAGGGACCTCCCGGGTCATGAGAATCGTATGGTGGTTT
TTGGCGAGGCGCGTTCGGCGCTCTATGAGTCGATGAAGCGGGATATGAGG
AAGAAGGAGCGCAAGAAGAAATGGGAGCCCTACGTCAGGAAAACGGTACC
GAATGGTCCCCCAGGTCAAACAGGAGCCTGATTCCCAGACACCATACATC
AAACCCGACCCATATATCAAACAGGATCCCGACAGCAAGGATACAGTACT
CGCTGATATCGACGATGAAGATCTATATGAGGATGCGGGCGATCTAGACT
TCTCGGCTGCGAACCAGAGCGTCTGGCTTTCACGGCTTCCCCGGTCACTA
TGGGAACATTGGGCGCATTTGTCAAACAGCGCCGGCGATGACGACGAGGA
GATTCAGATTGGGACAATGAGGATTGAGGGTACACAGAATGATCTCAAAC
GGCAAGCAACAAGGCCAGTCAAGGCCAAGGCCCAGGAGAACAAAACCACT
CGTATGCCTCAAAACGAGCTGTTGGATCTTATCTACCAGTGCTTCAGGGA
ATACAAGTACTGGCCATTTAAGAACCTCAAAGCGAGACTGCGACAGCCCG
AGGCTTATCTCAAACAAACTCTGGAAATGGTTGCGCATTTGGTTAAAGCT
GGTGACTTTGCTATGACCTGGGAGCTGAAGCCCGAAGCGAGGGAAAGCAA
CTACGCCAATGCGATGTACAACGATGCTAAGGATGAACTCGCTCCGGGAG
ACTACAACTTCGAGGACGGCTCTGAAGAGGAAGCCACGCCTTCCGGTATG
ATGACAGATAATGACGAAGGACAGTTCGAGAACGTTGTCTAAAACAAACC
GCTTTGGTGGGGAGCGTGAGTGAAGAGTTCAACTGCCTTCCGGTTGAGAA
TGAGGAATTCCGGCGGTTGTCGGAGAAGAAGGCTCTGGAGGCACTCAAAC
CGAAGCGTGAGACTGTATTTATCGATAAGATTCCGGGTAAGATGCTCCAG
CCGCGGAATGCATTGCCCGGAGAGAAGGGTGCTTTTGTGGTCAGTTTGCG
CATAAACGCACGAGAAGACAATCGCGATATTCCTAAAGACTATCTACTGC
AACGGCAAACGATAACCTCAGAGAATGTTTCGCACTTGACGCAAAATACG
TACCTTTTCACGGAGAGGGACCTCCCGGGTCATGAGAATCGTATGGTGGT
TTTTGGCGAGGCGCGTTCGGCGCTCTATGAGTCGATGAAGCGGGATATGA
GGAAGAAGGAGCGCAAGAAGAAATGGGAGCCCTACGTCAGGAAAACGGTA
CCGAATGGTCCCCCAGGTCAAACAGGAGCCTGATTCCCAGACACCATACA
TCAAACCCGACCCATATATCAAACAGGATCCCGACAGCAAGGATACAGTA
CTCGCTGATATCGACGATGAAGATCTATATGAGGATGCGGGCGATCTAGA
CTTCTCGGCTGCGAACCAGAGCGTCTGGCTTTCACGGCTTCCCCGGTCAC
TATGGGAACATTGGGCGCATTTGTCAAACAGCGCCGGCGATGACGACGAG
GAGATTCAGATTGGGACAATGAGGATTGAGGGTACACAGAATGATCTCAA
ACGGCAAGCAACAAGGCCAGTCAAGGCCAAGGCCCAGGAGAACAAAACCA
CTCGTATGCCTCAAAACGAGCTGTTGGATCTTATCTACCAGTGCTTCAGG
GAATACAAGTACTGGCCATTTAAGAACCTCAAAGCGAGACTGCGACAGCC
CGAGGCTTATCTCAAACAAACTCTGGAAATGGTTGCGCATTTGGTTAAAG
CTGGTGACTTTGCTATGACCTGGGAGCTGAAGCCCGAAGCGAGGGAAAGC
AACTACGCCAATGCGATGTACAACGATGCTAAGGATGAACTCGCTCCGGG
AGACTACAACTTCGAGGACGGCTCTGAAGAGGAAGCCACGCCTTCCGGTA
TGATGACAGATAATGACGAAGGACAGTTCGAGAACGTTGTCTAAAACAAA
CCGCTTTGGTGGGGAGCGTGAGTGAAGAGTTCAACTGCCTTCCGGTTGAG
AATGAGGAATTCCGGCGGTTGTCGGAGAAGAAGGCTCTGGAGGCACTCAA
ACCGAAGCGTGAGACTGTATTTATCGATAAGATTCCGGGTAAGATGCTCC
AGCCGCGGAATGCATTGCCCGGAGAGAAGGGTGCTTTTGTGGTCAGTTTG
CGCATAAACGCACGAGAAGACAATCGCGATATTCCTAAAGACTATCTACT
GCAACGGCAAACGATAACCTCAGAGAATGTTTCGCACTTGACGCAAAATA
CGTACCTTTTCACGGAGAGGGACCTCCCGGGTCATGAGAATCGTATGGTG
GTTTTTGGCGAGGCGCGTTCGGCGCTCTATGAGTCGATGAAGCGGGATAT
GAGGAAGAAGGAGCGCAAGAAGAAATGGGAGCCCTACGTCAGGAAAACGG
TACCGAATGGTCCCCCAGGTCAAACAGGAGCCTGATTCCCAGACACCATA
CATCAAACCCGACCCATATATCAAACAGGATCCCGACAGCAAGGATACAG
TACTCGCTGATATCGACGATGAAGATCTATATGAGGATGCGGGCGATCTA
GACTTCTCGGCTGCGAACCAGAGCGTCTGGCTTTCACGGCTTCCCCGGTC
ACTATGGGAACATTGGGCGCATTTGTCAAACAGCGCCGGCGATGACGACG
AGGAGATTCAGATTGGGACAATGAGGATTGAGGGTACACAGAATGATCTC
AAACGGCAAGCAACAAGGCCAGTCAAGGCCAAGGCCCAGGAGAACAAAAC
CACTCGTATGCCTCAAAACGAGCTGTTGGATCTTATCTACCAGTGCTTCA
GGGAATACAAGTACTGGCCATTTAAGAACCTCAAAGCGAGACTGCGACAG
CCCGAGGCTTATCTCAAACAAACTCTGGAAATGGTTGCGCATTTGGTTAA
AGCTGGTGACTTTGCTATGACCTGGGAGCTGAAGCCCGAAGCGAGGGAAA
GCAACTACGCCAATGCGATGTACAACGATGCTAAGGATGAACTCGCTCCG
GGAGACTACAACTTCGAGGACGGCTCTGAAGAGGAAGCCACGCCTTCCGG
TATGATGACAGATAATGACGAAGGACAGTTCGAGAACGTTGTCTAAAACA
AACCGCTTTGGTGGGGAGCGTGAGTGAAGAGTTCAACTGCCTTCCGGTTG
AGAATGAGGAATTCCGGCGGTTGTCGGAGAAGAAGGCTCTGGAGGCACTC
AAACCGAAGCGTGAGACTGTATTTATCGATAAGATTCCGGGTAAGATGCT
CCAGCCGCGGAATGCATTGCCCGGAGAGAAGGGTGCTTTTGTGGTCAGTT
TGCGCATAAACGCACGAGAAGACAATCGCGATATTCCTAAAGACTATCTA
CTGCAACGGCAAACGATAACCTCAGAGAATGTTTCGCACTTGACGCAAAA
TACGTACCTTTTCACGGAGAGGGACCTCCCGGGTCATGAGAATCGTATGG
TGGTTTTTGGCGAGGCGCGTTCGGCGCTCTATGAGTCGATGAAGCGGGAT
ATGAGGAAGAAGGAGCGCAAGAAGAAATGGGAGCCCTACGTCAGGAAAAC
GGTACCGAATGGTCCCCCAGGTCAAACAGGAGCCTGATTCCCAGACACCA
TACATCAAACCCGACCCATATATCAAACAGGATCCCGACAGCAAGGATAC
AGTACTCGCTGATATCGACGATGAAGATCTATATGAGGATGCGGGCGATC
TAGACTTCTCGGCTGCGAACCAGAGCGTCTGGCTTTCACGGCTTCCCCGG
TCACTATGGGAACATTGGGCGCATTTGTCAAACAGCGCCGGCGATGACGA
CGAGGAGATTCAGATTGGGACAATGAGGATTGAGGGTACACAGAATGATC
TCAAACGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09262NIR |
| DBxref | InterPro:IPR036390 |
| DBxref | InterPro:IPR011039 |
| DBxref | InterPro:IPR040450 |
| DBxref | InterPro:IPR036388 |
| DBxref | InterPro:IPR040504 |
| DBxref | PFAM:PF17683 |
| DBxref | PFAM:PF02270 |
| Product | Transcription initiation factor IIF beta subunit family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| NKJJ01000010.1 | supercontig | NKJJ01000010.1:534040..535386 - |
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