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CAN33_13860-T1, CAN33_13860-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_13860-T1
Unique NameCAN33_13860-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000010.1:1098330..1098969+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_13860-T1 ID=CAN33_13860-T1|Name=CAN33_13860-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=640bp|location=Sequence derived from alignment at NKJJ01000010.1:1098330..1098969+ (Aspergillus niger FDAARGOS_311)
ATGGGTCGCGTCCGTACCAAGGTGAGCATACACGACCGCAATAATGAAGG
AAAGAAAGAATATCAATTCTAACGAAAATGCGCGCGACAATAGACAGTCA
AGCGTTCCGCTAAGGTCGTTATCGAGCGTTACTACCCCAAGTTGACGCTC
GACTTCGAGACCAACAAGCGTATCTGCGATGAGATCGCTATCATTGCCTC
CAAGCGTCTCCGCAACAAGGTTAGTGATTACCATCTTTTTTCTCCCGGAA
ATTCCGGATATAATGGTCAAATGGCAATATACTAATAAGGAATTGGATTT
AGATCGCTGGTTACACCACCCACCTTATGAAGCGTATCCAGCGTGGCCCT
GTCCGCGGTATCTCCTTCAAGCTCCAGGAGGAGGAGCGTGAGCGCAAGGA
TCAGTACGTTCCTGAGGTCTCCGCTCTGGATGTTTCCCAGACCGAGTCCG
GCCAGCTCGACGTCGACTCTGAGACCAAGGACCTGCTCAAGAGCATGGGC
GTAAGTTCTCCCTTATGGAATCTACATTCATGATTTATATCATGTCTAAC
TCGATCGTGCTTTAGTTCGACAACCTCAAGGTCAACGTCATCCCCGTCTC
CCAGCAGCAGGCTCAGGAGCGCCCCCGCCGCTACCGGTAG
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Coding sequence (CDS) from alignment at NKJJ01000010.1:1098330..1098969+

>CAN33_13860-T1 ID=CAN33_13860-T1|Name=CAN33_13860-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1680bp|location=Sequence derived from alignment at NKJJ01000010.1:1098330..1098969+ (Aspergillus niger FDAARGOS_311)
ATGGGTCGCGTCCGTACCAAGACAGTCAAGCGTTCCGCTAAGGTCGTTAT
CGAGCGTTACTACCCCAAGTTGACGCTCGACTTCGAGACCAACAAGCGTA
TCTGCGATGAGATCGCTATCATTGCCTCCAAGCGTCTCCGCAACAAGATC
GCTGGTTACACCACCCACCTTATGAAGCGTATCCAGCGTGGCCCTGTCCG
CGGTATCTCCTTCAAGCTCCAGGAGGAGGAGCGTGAGCGCAAGGATCAGT
ACGTTCCTGAGGTCTCCGCTCTGGATGTTTCCCAGACCGAGTCCGGCCAG
CTCGACGTCGACTCTGAGACCAAGGACCTGCTCAAGAGCATGGGCTTCGA
CAACCTCAAGGTCAACGTCATCCCCGTCTCCCAGCAGCAGGCTCAGGAGC
GCCCCCGCCGCTACCGGTAGATGGGTCGCGTCCGTACCAAGACAGTCAAG
CGTTCCGCTAAGGTCGTTATCGAGCGTTACTACCCCAAGTTGACGCTCGA
CTTCGAGACCAACAAGCGTATCTGCGATGAGATCGCTATCATTGCCTCCA
AGCGTCTCCGCAACAAGATCGCTGGTTACACCACCCACCTTATGAAGCGT
ATCCAGCGTGGCCCTGTCCGCGGTATCTCCTTCAAGCTCCAGGAGGAGGA
GCGTGAGCGCAAGGATCAGTACGTTCCTGAGGTCTCCGCTCTGGATGTTT
CCCAGACCGAGTCCGGCCAGCTCGACGTCGACTCTGAGACCAAGGACCTG
CTCAAGAGCATGGGCTTCGACAACCTCAAGGTCAACGTCATCCCCGTCTC
CCAGCAGCAGGCTCAGGAGCGCCCCCGCCGCTACCGGTAGATGGGTCGCG
TCCGTACCAAGACAGTCAAGCGTTCCGCTAAGGTCGTTATCGAGCGTTAC
TACCCCAAGTTGACGCTCGACTTCGAGACCAACAAGCGTATCTGCGATGA
GATCGCTATCATTGCCTCCAAGCGTCTCCGCAACAAGATCGCTGGTTACA
CCACCCACCTTATGAAGCGTATCCAGCGTGGCCCTGTCCGCGGTATCTCC
TTCAAGCTCCAGGAGGAGGAGCGTGAGCGCAAGGATCAGTACGTTCCTGA
GGTCTCCGCTCTGGATGTTTCCCAGACCGAGTCCGGCCAGCTCGACGTCG
ACTCTGAGACCAAGGACCTGCTCAAGAGCATGGGCTTCGACAACCTCAAG
GTCAACGTCATCCCCGTCTCCCAGCAGCAGGCTCAGGAGCGCCCCCGCCG
CTACCGGTAGATGGGTCGCGTCCGTACCAAGACAGTCAAGCGTTCCGCTA
AGGTCGTTATCGAGCGTTACTACCCCAAGTTGACGCTCGACTTCGAGACC
AACAAGCGTATCTGCGATGAGATCGCTATCATTGCCTCCAAGCGTCTCCG
CAACAAGATCGCTGGTTACACCACCCACCTTATGAAGCGTATCCAGCGTG
GCCCTGTCCGCGGTATCTCCTTCAAGCTCCAGGAGGAGGAGCGTGAGCGC
AAGGATCAGTACGTTCCTGAGGTCTCCGCTCTGGATGTTTCCCAGACCGA
GTCCGGCCAGCTCGACGTCGACTCTGAGACCAAGGACCTGCTCAAGAGCA
TGGGCTTCGACAACCTCAAGGTCAACGTCATCCCCGTCTCCCAGCAGCAG
GCTCAGGAGCGCCCCCGCCGCTACCGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS17CAN33_13860Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_13860-T1.exon1CAN33_13860-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_13860-T1.exon2CAN33_13860-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_13860-T1.exon3CAN33_13860-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_13860-T1.exon4CAN33_13860-T1.exon4Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_13860-T1.cdsCAN33_13860-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_13860-T1CAN33_13860-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR018273
DBxrefInterPro:IPR036401
DBxrefInterPro:IPR001210
DBxrefPFAM:PF00833
Product40S ribosomal protein S17
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000010.1supercontigNKJJ01000010.1:1098330..1098969 +
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