You are here

Home

CAN33_14585-T1, CAN33_14585-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_14585-T1
Unique NameCAN33_14585-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000010.1:1566334..1567588-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_14585-T1 ID=CAN33_14585-T1|Name=CAN33_14585-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1255bp|location=Sequence derived from alignment at NKJJ01000010.1:1566334..1567588- (Aspergillus niger FDAARGOS_311)
ATGCTGCCATCCCTGCTTTCCGTTTTATTCTTCCTGCTCTATGCAGTGAA
CGCTGTTCCACTGGCGCCCCGGGCGAGTGCACTCGCCGGGATCGACACCA
AGTCCTTCTCTAAGACCAAAGATTATCCCCTTCCCAACCTGGGCAACATC
GTTGCTCATGATCCTAATGTCATTCAGCATGATGGCTATTTCTACTTGTA
CAAAGGTGGTGTGCACATTCCGATTCACAGAGCCCGCTCCCTCAGTGGGC
CTTGGGAACAGGTCGGGACCGTCCTGGACGACTCCAGCGTGATTCCAAAA
CAGAACCGCTCTCGTCCTTGGGCCCCTACGACCATTCAGCACGACAACCG
CTTCTACTGCTTCTACGCGATCAGCGAGAACGGCAGCCGCGACAGCGCCA
TTGGAGTCGCCTCTTCGGATACTCCCGTCGGTGGAAACTGGACGGACCAT
GGCGCTGTCGTCAATACCGGCAAGGGAGACCTGTCGGACATCTATCCTTA
CTCGGTATCCAATGCGATTGACGGCGCATTCATCACCGATCAAGAGACCG
GACAGTCTCACCTGCTTTACGGGAGCTATTGGCATGGCATTTTCTCGGTG
CCATTGGCCGATGATCTCCTTTCCGTCAAAACCCCGAAGACCCCGAACGC
GACCAACCTGGCCTACATCCCAGATGCCAAGTCCAAGCCTATCGAGGGCT
CTTTCATGACTTACAAGGCGCCTTACTACTACCTGTGGTTCAGTCACGGC
AAATGTTGTCACTTTGATATTCACGCTTTTCCGCCCATGGGAGACGAGTA
CGTGCACATGATCTTCTATTCGAGAACTTGGTAGCTAACATTTACAACAG
GTACAACATCCGGGTCGGCAGATCTAAGAGTGCGACAGGTCCTTTCGTGG
ACAAGGATGGCCATGATACCCTCAAGGGAGGCGGTACCATCGTCTACGGC
TCCAACCATGGAATTGTCTATGCCCCGGGTGGTGTGGGCGTGTTGATCAA
CAACGGCAGCGAAGCCGATGTCTTGTATTACCATTATCGTACGTTTACAG
TCCACTGTTGTGGGGAAGTCAGCTAACAGAGCTTGCAGTCAACACTACAT
CTGGTTTCGCACAGGGCGTGAGTCTAGCCTTAACTATCCATTGACAGGAT
GATACTAACGCAATACAGGACGCGCACTTGGGATGGAACTATCTGCACTA
TGTAAATGGATGGCCAGTGGCTGTCGAGGGGTATGTTAATGCCAACGGCA
AATAA
back to top

Coding sequence (CDS) from alignment at NKJJ01000010.1:1566334..1567588-

>CAN33_14585-T1 ID=CAN33_14585-T1|Name=CAN33_14585-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4404bp|location=Sequence derived from alignment at NKJJ01000010.1:1566334..1567588- (Aspergillus niger FDAARGOS_311)
GACGCGCACTTGGGATGGAACTATCTGCACTATGTAAATGGATGGCCAGT
GGCTGTCGAGGGGTATGTTAATGCCAACGGCAAATAATCAACACTACATC
TGGTTTCGCACAGGGCGTACAACATCCGGGTCGGCAGATCTAAGAGTGCG
ACAGGTCCTTTCGTGGACAAGGATGGCCATGATACCCTCAAGGGAGGCGG
TACCATCGTCTACGGCTCCAACCATGGAATTGTCTATGCCCCGGGTGGTG
TGGGCGTGTTGATCAACAACGGCAGCGAAGCCGATGTCTTGTATTACCAT
TATCATGCTGCCATCCCTGCTTTCCGTTTTATTCTTCCTGCTCTATGCAG
TGAACGCTGTTCCACTGGCGCCCCGGGCGAGTGCACTCGCCGGGATCGAC
ACCAAGTCCTTCTCTAAGACCAAAGATTATCCCCTTCCCAACCTGGGCAA
CATCGTTGCTCATGATCCTAATGTCATTCAGCATGATGGCTATTTCTACT
TGTACAAAGGTGGTGTGCACATTCCGATTCACAGAGCCCGCTCCCTCAGT
GGGCCTTGGGAACAGGTCGGGACCGTCCTGGACGACTCCAGCGTGATTCC
AAAACAGAACCGCTCTCGTCCTTGGGCCCCTACGACCATTCAGCACGACA
ACCGCTTCTACTGCTTCTACGCGATCAGCGAGAACGGCAGCCGCGACAGC
GCCATTGGAGTCGCCTCTTCGGATACTCCCGTCGGTGGAAACTGGACGGA
CCATGGCGCTGTCGTCAATACCGGCAAGGGAGACCTGTCGGACATCTATC
CTTACTCGGTATCCAATGCGATTGACGGCGCATTCATCACCGATCAAGAG
ACCGGACAGTCTCACCTGCTTTACGGGAGCTATTGGCATGGCATTTTCTC
GGTGCCATTGGCCGATGATCTCCTTTCCGTCAAAACCCCGAAGACCCCGA
ACGCGACCAACCTGGCCTACATCCCAGATGCCAAGTCCAAGCCTATCGAG
GGCTCTTTCATGACTTACAAGGCGCCTTACTACTACCTGTGGTTCAGTCA
CGGCAAATGTTGTCACTTTGATATTCACGCTTTTCCGCCCATGGGAGACG
AGACGCGCACTTGGGATGGAACTATCTGCACTATGTAAATGGATGGCCAG
TGGCTGTCGAGGGGTATGTTAATGCCAACGGCAAATAATCAACACTACAT
CTGGTTTCGCACAGGGCGTACAACATCCGGGTCGGCAGATCTAAGAGTGC
GACAGGTCCTTTCGTGGACAAGGATGGCCATGATACCCTCAAGGGAGGCG
GTACCATCGTCTACGGCTCCAACCATGGAATTGTCTATGCCCCGGGTGGT
GTGGGCGTGTTGATCAACAACGGCAGCGAAGCCGATGTCTTGTATTACCA
TTATCATGCTGCCATCCCTGCTTTCCGTTTTATTCTTCCTGCTCTATGCA
GTGAACGCTGTTCCACTGGCGCCCCGGGCGAGTGCACTCGCCGGGATCGA
CACCAAGTCCTTCTCTAAGACCAAAGATTATCCCCTTCCCAACCTGGGCA
ACATCGTTGCTCATGATCCTAATGTCATTCAGCATGATGGCTATTTCTAC
TTGTACAAAGGTGGTGTGCACATTCCGATTCACAGAGCCCGCTCCCTCAG
TGGGCCTTGGGAACAGGTCGGGACCGTCCTGGACGACTCCAGCGTGATTC
CAAAACAGAACCGCTCTCGTCCTTGGGCCCCTACGACCATTCAGCACGAC
AACCGCTTCTACTGCTTCTACGCGATCAGCGAGAACGGCAGCCGCGACAG
CGCCATTGGAGTCGCCTCTTCGGATACTCCCGTCGGTGGAAACTGGACGG
ACCATGGCGCTGTCGTCAATACCGGCAAGGGAGACCTGTCGGACATCTAT
CCTTACTCGGTATCCAATGCGATTGACGGCGCATTCATCACCGATCAAGA
GACCGGACAGTCTCACCTGCTTTACGGGAGCTATTGGCATGGCATTTTCT
CGGTGCCATTGGCCGATGATCTCCTTTCCGTCAAAACCCCGAAGACCCCG
AACGCGACCAACCTGGCCTACATCCCAGATGCCAAGTCCAAGCCTATCGA
GGGCTCTTTCATGACTTACAAGGCGCCTTACTACTACCTGTGGTTCAGTC
ACGGCAAATGTTGTCACTTTGATATTCACGCTTTTCCGCCCATGGGAGAC
GAGACGCGCACTTGGGATGGAACTATCTGCACTATGTAAATGGATGGCCA
GTGGCTGTCGAGGGGTATGTTAATGCCAACGGCAAATAATCAACACTACA
TCTGGTTTCGCACAGGGCGTACAACATCCGGGTCGGCAGATCTAAGAGTG
CGACAGGTCCTTTCGTGGACAAGGATGGCCATGATACCCTCAAGGGAGGC
GGTACCATCGTCTACGGCTCCAACCATGGAATTGTCTATGCCCCGGGTGG
TGTGGGCGTGTTGATCAACAACGGCAGCGAAGCCGATGTCTTGTATTACC
ATTATCATGCTGCCATCCCTGCTTTCCGTTTTATTCTTCCTGCTCTATGC
AGTGAACGCTGTTCCACTGGCGCCCCGGGCGAGTGCACTCGCCGGGATCG
ACACCAAGTCCTTCTCTAAGACCAAAGATTATCCCCTTCCCAACCTGGGC
AACATCGTTGCTCATGATCCTAATGTCATTCAGCATGATGGCTATTTCTA
CTTGTACAAAGGTGGTGTGCACATTCCGATTCACAGAGCCCGCTCCCTCA
GTGGGCCTTGGGAACAGGTCGGGACCGTCCTGGACGACTCCAGCGTGATT
CCAAAACAGAACCGCTCTCGTCCTTGGGCCCCTACGACCATTCAGCACGA
CAACCGCTTCTACTGCTTCTACGCGATCAGCGAGAACGGCAGCCGCGACA
GCGCCATTGGAGTCGCCTCTTCGGATACTCCCGTCGGTGGAAACTGGACG
GACCATGGCGCTGTCGTCAATACCGGCAAGGGAGACCTGTCGGACATCTA
TCCTTACTCGGTATCCAATGCGATTGACGGCGCATTCATCACCGATCAAG
AGACCGGACAGTCTCACCTGCTTTACGGGAGCTATTGGCATGGCATTTTC
TCGGTGCCATTGGCCGATGATCTCCTTTCCGTCAAAACCCCGAAGACCCC
GAACGCGACCAACCTGGCCTACATCCCAGATGCCAAGTCCAAGCCTATCG
AGGGCTCTTTCATGACTTACAAGGCGCCTTACTACTACCTGTGGTTCAGT
CACGGCAAATGTTGTCACTTTGATATTCACGCTTTTCCGCCCATGGGAGA
CGAGACGCGCACTTGGGATGGAACTATCTGCACTATGTAAATGGATGGCC
AGTGGCTGTCGAGGGGTATGTTAATGCCAACGGCAAATAATCAACACTAC
ATCTGGTTTCGCACAGGGCGTACAACATCCGGGTCGGCAGATCTAAGAGT
GCGACAGGTCCTTTCGTGGACAAGGATGGCCATGATACCCTCAAGGGAGG
CGGTACCATCGTCTACGGCTCCAACCATGGAATTGTCTATGCCCCGGGTG
GTGTGGGCGTGTTGATCAACAACGGCAGCGAAGCCGATGTCTTGTATTAC
CATTATCATGCTGCCATCCCTGCTTTCCGTTTTATTCTTCCTGCTCTATG
CAGTGAACGCTGTTCCACTGGCGCCCCGGGCGAGTGCACTCGCCGGGATC
GACACCAAGTCCTTCTCTAAGACCAAAGATTATCCCCTTCCCAACCTGGG
CAACATCGTTGCTCATGATCCTAATGTCATTCAGCATGATGGCTATTTCT
ACTTGTACAAAGGTGGTGTGCACATTCCGATTCACAGAGCCCGCTCCCTC
AGTGGGCCTTGGGAACAGGTCGGGACCGTCCTGGACGACTCCAGCGTGAT
TCCAAAACAGAACCGCTCTCGTCCTTGGGCCCCTACGACCATTCAGCACG
ACAACCGCTTCTACTGCTTCTACGCGATCAGCGAGAACGGCAGCCGCGAC
AGCGCCATTGGAGTCGCCTCTTCGGATACTCCCGTCGGTGGAAACTGGAC
GGACCATGGCGCTGTCGTCAATACCGGCAAGGGAGACCTGTCGGACATCT
ATCCTTACTCGGTATCCAATGCGATTGACGGCGCATTCATCACCGATCAA
GAGACCGGACAGTCTCACCTGCTTTACGGGAGCTATTGGCATGGCATTTT
CTCGGTGCCATTGGCCGATGATCTCCTTTCCGTCAAAACCCCGAAGACCC
CGAACGCGACCAACCTGGCCTACATCCCAGATGCCAAGTCCAAGCCTATC
GAGGGCTCTTTCATGACTTACAAGGCGCCTTACTACTACCTGTGGTTCAG
TCACGGCAAATGTTGTCACTTTGATATTCACGCTTTTCCGCCCATGGGAG
ACGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046558arabinan endo-1,5-alpha-L-arabinosidase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_14585CAN33_14585Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_14585-T1CAN33_14585-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_14585-T1.cdsCAN33_14585-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_14585-T1.exon4CAN33_14585-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_14585-T1.exon3CAN33_14585-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_14585-T1.exon2CAN33_14585-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_14585-T1.exon1CAN33_14585-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH43_30
NoteCAZy:GH43_7
NoteCAZy:GH43_8
NoteCAZy:GH43_4
NoteCAZy:GH43_3
NoteCAZy:GH43
NoteCAZy:GH43_5
NoteCAZy:GH43_6
DBxrefInterPro:IPR016840
DBxrefInterPro:IPR023296
DBxrefInterPro:IPR006710
DBxrefPFAM:PF04616
ProductGlycosyl hydrolases family 43 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000010.1supercontigNKJJ01000010.1:1566334..1567588 -
Powered by Drupal