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CAN33_16745-T1, CAN33_16745-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_16745-T1
Unique NameCAN33_16745-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000011.1:355784..356109+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_16745-T1 ID=CAN33_16745-T1|Name=CAN33_16745-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=326bp|location=Sequence derived from alignment at NKJJ01000011.1:355784..356109+ (Aspergillus niger FDAARGOS_311)
ATGCCTCGTGCCGTCAGAGGTATCACAACCGCAGCACCGTCCAATCCCAA
CTATCGCTAACGAAGGCCTAAACAGGAGTCCTCATCGAGTGCGATCCGTC
CGTGAAAGCCATTATCCTCAAGTACGACGAAGAAAGACACGACTATATCG
TCGAAGACCTCGACGATGACCGTCATCTGGTCATCAAGGAGAGCCAGCTG
CAGAACCTGAAAGCGAGGTTGACAAAGGTAGGGATGCCGGAATGAGCTGT
TTGAGGCCTGACGCTGATGAGGCAACAGGAGCTTGACGATAAGGTTATGC
AGCCTGATGAGTCGGAATCGGAGTGA
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Coding sequence (CDS) from alignment at NKJJ01000011.1:355784..356109+

>CAN33_16745-T1 ID=CAN33_16745-T1|Name=CAN33_16745-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=657bp|location=Sequence derived from alignment at NKJJ01000011.1:355784..356109+ (Aspergillus niger FDAARGOS_311)
ATGCCTCGTGCCGTCAGAGGAGTCCTCATCGAGTGCGATCCGTCCGTGAA
AGCCATTATCCTCAAGTACGACGAAGAAAGACACGACTATATCGTCGAAG
ACCTCGACGATGACCGTCATCTGGTCATCAAGGAGAGCCAGCTGCAGAAC
CTGAAAGCGAGGTTGACAAAGGAGCTTGACGATAAGGTTATGCAGCCTGA
TGAGTCGGAATCGGAGTGAATGCCTCGTGCCGTCAGAGGAGTCCTCATCG
AGTGCGATCCGTCCGTGAAAGCCATTATCCTCAAGTACGACGAAGAAAGA
CACGACTATATCGTCGAAGACCTCGACGATGACCGTCATCTGGTCATCAA
GGAGAGCCAGCTGCAGAACCTGAAAGCGAGGTTGACAAAGGAGCTTGACG
ATAAGGTTATGCAGCCTGATGAGTCGGAATCGGAGTGAATGCCTCGTGCC
GTCAGAGGAGTCCTCATCGAGTGCGATCCGTCCGTGAAAGCCATTATCCT
CAAGTACGACGAAGAAAGACACGACTATATCGTCGAAGACCTCGACGATG
ACCGTCATCTGGTCATCAAGGAGAGCCAGCTGCAGAACCTGAAAGCGAGG
TTGACAAAGGAGCTTGACGATAAGGTTATGCAGCCTGATGAGTCGGAATC
GGAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006289nucleotide-excision repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TFB5CAN33_16745Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_16745-T1.exon1CAN33_16745-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_16745-T1.exon2CAN33_16745-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_16745-T1.exon3CAN33_16745-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_16745-T1.cdsCAN33_16745-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_16745-T1CAN33_16745-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_10000111.3
DBxrefInterPro:IPR035935
DBxrefInterPro:IPR009400
DBxrefPFAM:PF06331
ProductTFIIH complex subunit tfb5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000011.1supercontigNKJJ01000011.1:355784..356109 +
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