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CAN33_17435-T1, CAN33_17435-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_17435-T1
Unique NameCAN33_17435-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000011.1:794065..794557+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_17435-T1 ID=CAN33_17435-T1|Name=CAN33_17435-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=493bp|location=Sequence derived from alignment at NKJJ01000011.1:794065..794557+ (Aspergillus niger FDAARGOS_311)
ATGCTCTTCTTCAGGTAAGAAAGCGCGCGAGATCCTCAAACAAGCACCAA
AGCGACCACAGCTAACTCCCTCTCCCTACGGGGATGACTATTTGGTAGCT
TCTTCAAGACCTTAACCAACCAAACGGTGACCATCGAACTCAAGAACGAC
ATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGTACCTGAACATTAA
GCTGGACGATGTGGACGTCTTGGATCTGGATAAATACCCGCATTTGTCGT
CCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCGGTATGTTATGCTG
CCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATGCGACGAGGAGAGG
TATGTTTCCTCATCCCTGTCCCCTTGATCTATTTGAAGGAACATGCTTAG
ATGTTTCTGTATGTGTGTGTATGGTTGTATGGGTTGCTAATGATTCGTTT
GGTATATATAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGA
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Coding sequence (CDS) from alignment at NKJJ01000011.1:794065..794557+

>CAN33_17435-T1 ID=CAN33_17435-T1|Name=CAN33_17435-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=891bp|location=Sequence derived from alignment at NKJJ01000011.1:794065..794557+ (Aspergillus niger FDAARGOS_311)
ATGCTCTTCTTCAGCTTCTTCAAGACCTTAACCAACCAAACGGTGACCAT
CGAACTCAAGAACGACATTCGCATCCGCGGCACCCTCAAATCCGTCGACC
AGTACCTGAACATTAAGCTGGACGATGTGGACGTCTTGGATCTGGATAAA
TACCCGCATTTGTCGTCCGTAAAGAACATGTTTATTCGTGGTAGTGTGGT
GCGGTATGTTATGCTGCCGAGATCGGAGGTGGATATTGGGCTTTTGGAGG
ATGCGACGAGGAGAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGAATG
CTCTTCTTCAGCTTCTTCAAGACCTTAACCAACCAAACGGTGACCATCGA
ACTCAAGAACGACATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGT
ACCTGAACATTAAGCTGGACGATGTGGACGTCTTGGATCTGGATAAATAC
CCGCATTTGTCGTCCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCG
GTATGTTATGCTGCCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATG
CGACGAGGAGAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGAATGCTC
TTCTTCAGCTTCTTCAAGACCTTAACCAACCAAACGGTGACCATCGAACT
CAAGAACGACATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGTACC
TGAACATTAAGCTGGACGATGTGGACGTCTTGGATCTGGATAAATACCCG
CATTTGTCGTCCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCGGTA
TGTTATGCTGCCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATGCGA
CGAGGAGAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM2CAN33_17435Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_17435-T1.exon1CAN33_17435-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_17435-T1.exon2CAN33_17435-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_17435-T1.exon3CAN33_17435-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_17435-T1.cdsCAN33_17435-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_17435-T1CAN33_17435-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09265FL1
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR016654
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductU6 snRNA-associated Sm-like protein LSm2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000011.1supercontigNKJJ01000011.1:794065..794557 +
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