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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000011.1:1713819..1714665+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_18800-T1 ID=CAN33_18800-T1|Name=CAN33_18800-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=847bp|location=Sequence derived from alignment at NKJJ01000011.1:1713819..1714665+ (Aspergillus niger FDAARGOS_311)
ATGCTCACCGTTCCAGAAGCTGGTCGCGATCATCGTCGCACAACCAAGCA
CCATCCCGTAGTCGAAGCCGAAGTGAAACTCCCAGACGTTACAGGAAAAA
AGACTACAGCCGGACTCCGAGTCCCTCTGCCGATGCTTCAAGAAGCTCAA
AGGTCGGTTGAGCTCCCATTGAACCAGGTTTTAATGCTGAAACTAATGGA
AATCAAAGATAGTTATCGAAAAGTTGACTAAAAATGTCACCGAATCACAT
CTCCGGGAGATATTCGGTGGTTTTGGCGACATACAAAGTCTTGATCTCCC
TATGAATAAAGCTTGTAAACTCTCTAGACTTATGCTCTCCTAGGTGCCTA
GGCTGACGCCTCACTAGTCATGACAAACAGGGGCACCGCATACATACTTT
ACCACGATCCTGCGGATGCAGAGGCGGCCATCGCGCATATGCACGAGGCT
CAGCTAGATGGTGCCATGCTGAACGTGTCGATTGTTCTTCCTAGGAGAGC
CTTCTCTCGCTCACCACCACCAGTTCAACATAGCAGAGGAAGCTTTGGCC
GTCCAGGACACGGCCGCGGACCTCCGTCGGATAGTCGCGCTCCAAGGTCG
CCGCCACCCGCTAGGAGGTATCGCCGTTCTCGGCATATGGAAAGGCATGA
CATCTATAGGCCTCGCTCTCTGTCGCGCTCCAGGTCGCCACGCCGTTCTC
GATCCCTTTCTTCCAAGTCTCTCTCAAACTCCCCACCGCCAAGACGGACA
CATTCGCGTATGGACAGCTCTCAGCGTCGCCGTCGCCGTAGCCCGAGCTA
CAGCAGCTATGGCTATAGCAGTCGCAGTGATAGGGACCGGAGTATGA back to topCoding sequence (CDS) from alignment at NKJJ01000011.1:1713819..1714665+ >CAN33_18800-T1 ID=CAN33_18800-T1|Name=CAN33_18800-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2772bp|location=Sequence derived from alignment at NKJJ01000011.1:1713819..1714665+ (Aspergillus niger FDAARGOS_311)
ATGCTCACCGTTCCAGAAGCTGGTCGCGATCATCGTCGCACAACCAAGCA
CCATCCCGTAGTCGAAGCCGAAGTGAAACTCCCAGACGTTACAGGAAAAA
AGACTACAGCCGGACTCCGAGTCCCTCTGCCGATGCTTCAAGAAGCTCAA
AGGTCGATAGTTATCGAAAAGTTGACTAAAAATGTCACCGAATCACATCT
CCGGGAGATATTCGGTGGTTTTGGCGACATACAAAGTCTTGATCTCCCTA
TGAATAAAGCTTTCATGACAAACAGGGGCACCGCATACATACTTTACCAC
GATCCTGCGGATGCAGAGGCGGCCATCGCGCATATGCACGAGGCTCAGCT
AGATGGTGCCATGCTGAACTTCAACATAGCAGAGGAAGCTTTGGCCGTCC
AGGACACGGCCGCGGACCTCCGTCGGATAGTCGCGCTCCAAGGTCGCCGC
CACCCGCTAGGAGGTATCGCCGTTCTCGGCATATGGAAAGGCATGACATC
TATAGGCCTCGCTCTCTGTCGCGCTCCAGGTCGCCACGCCGTTCTCGATC
CCTTTCTTCCAAGTCTCTCTCAAACTCCCCACCGCCAAGACGGACACATT
CGCGTATGGACAGCTCTCAGCGTCGCCGTCGCCGTAGCCCGAGCTACAGC
AGCTATGGCTATAGCAGTCGCAGTGATAGGGACCGGAGTATGAATGCTCA
CCGTTCCAGAAGCTGGTCGCGATCATCGTCGCACAACCAAGCACCATCCC
GTAGTCGAAGCCGAAGTGAAACTCCCAGACGTTACAGGAAAAAAGACTAC
AGCCGGACTCCGAGTCCCTCTGCCGATGCTTCAAGAAGCTCAAAGGTCGA
TAGTTATCGAAAAGTTGACTAAAAATGTCACCGAATCACATCTCCGGGAG
ATATTCGGTGGTTTTGGCGACATACAAAGTCTTGATCTCCCTATGAATAA
AGCTTTCATGACAAACAGGGGCACCGCATACATACTTTACCACGATCCTG
CGGATGCAGAGGCGGCCATCGCGCATATGCACGAGGCTCAGCTAGATGGT
GCCATGCTGAACTTCAACATAGCAGAGGAAGCTTTGGCCGTCCAGGACAC
GGCCGCGGACCTCCGTCGGATAGTCGCGCTCCAAGGTCGCCGCCACCCGC
TAGGAGGTATCGCCGTTCTCGGCATATGGAAAGGCATGACATCTATAGGC
CTCGCTCTCTGTCGCGCTCCAGGTCGCCACGCCGTTCTCGATCCCTTTCT
TCCAAGTCTCTCTCAAACTCCCCACCGCCAAGACGGACACATTCGCGTAT
GGACAGCTCTCAGCGTCGCCGTCGCCGTAGCCCGAGCTACAGCAGCTATG
GCTATAGCAGTCGCAGTGATAGGGACCGGAGTATGAATGCTCACCGTTCC
AGAAGCTGGTCGCGATCATCGTCGCACAACCAAGCACCATCCCGTAGTCG
AAGCCGAAGTGAAACTCCCAGACGTTACAGGAAAAAAGACTACAGCCGGA
CTCCGAGTCCCTCTGCCGATGCTTCAAGAAGCTCAAAGGTCGATAGTTAT
CGAAAAGTTGACTAAAAATGTCACCGAATCACATCTCCGGGAGATATTCG
GTGGTTTTGGCGACATACAAAGTCTTGATCTCCCTATGAATAAAGCTTTC
ATGACAAACAGGGGCACCGCATACATACTTTACCACGATCCTGCGGATGC
AGAGGCGGCCATCGCGCATATGCACGAGGCTCAGCTAGATGGTGCCATGC
TGAACTTCAACATAGCAGAGGAAGCTTTGGCCGTCCAGGACACGGCCGCG
GACCTCCGTCGGATAGTCGCGCTCCAAGGTCGCCGCCACCCGCTAGGAGG
TATCGCCGTTCTCGGCATATGGAAAGGCATGACATCTATAGGCCTCGCTC
TCTGTCGCGCTCCAGGTCGCCACGCCGTTCTCGATCCCTTTCTTCCAAGT
CTCTCTCAAACTCCCCACCGCCAAGACGGACACATTCGCGTATGGACAGC
TCTCAGCGTCGCCGTCGCCGTAGCCCGAGCTACAGCAGCTATGGCTATAG
CAGTCGCAGTGATAGGGACCGGAGTATGAATGCTCACCGTTCCAGAAGCT
GGTCGCGATCATCGTCGCACAACCAAGCACCATCCCGTAGTCGAAGCCGA
AGTGAAACTCCCAGACGTTACAGGAAAAAAGACTACAGCCGGACTCCGAG
TCCCTCTGCCGATGCTTCAAGAAGCTCAAAGGTCGATAGTTATCGAAAAG
TTGACTAAAAATGTCACCGAATCACATCTCCGGGAGATATTCGGTGGTTT
TGGCGACATACAAAGTCTTGATCTCCCTATGAATAAAGCTTTCATGACAA
ACAGGGGCACCGCATACATACTTTACCACGATCCTGCGGATGCAGAGGCG
GCCATCGCGCATATGCACGAGGCTCAGCTAGATGGTGCCATGCTGAACTT
CAACATAGCAGAGGAAGCTTTGGCCGTCCAGGACACGGCCGCGGACCTCC
GTCGGATAGTCGCGCTCCAAGGTCGCCGCCACCCGCTAGGAGGTATCGCC
GTTCTCGGCATATGGAAAGGCATGACATCTATAGGCCTCGCTCTCTGTCG
CGCTCCAGGTCGCCACGCCGTTCTCGATCCCTTTCTTCCAAGTCTCTCTC
AAACTCCCCACCGCCAAGACGGACACATTCGCGTATGGACAGCTCTCAGC
GTCGCCGTCGCCGTAGCCCGAGCTACAGCAGCTATGGCTATAGCAGTCGC
AGTGATAGGGACCGGAGTATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR034201 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| Product | RNA recognition motif family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000011.1 | supercontig | NKJJ01000011.1:1713819..1714665 + |
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