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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000011.1:1726982..1727887+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_18820-T1 ID=CAN33_18820-T1|Name=CAN33_18820-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=906bp|location=Sequence derived from alignment at NKJJ01000011.1:1726982..1727887+ (Aspergillus niger FDAARGOS_311)
ATGGATCAGGATGATACATTGTTCGATTATGATGCCGGCTTAGAGGGCAC
ATTGCAAGATATAGCTGTGGATCCCAAGAGGGATGAACCTATTGCTGCAC
CAGTATTAGGGCTGGATGAAAAGGTCACAATCACTAAGCAGCGACGATTT
ACAGTCAAGTTGGATGAGAGCCGGTGAGACTGACATCCGGCGTAGCGCTC
TGAATACAGGCTTATTGCTTCCTAGGTTACTGTCACACGCCGGAATACCA
AAACTGCGTTCTACAGCGAAGTCGAAACTGAAATTCAAAGGCAAAGGGCA
TGAGGTCTGCTAGAACCGATTTGTATAGTCGCCGAGGGACCACTGCGTGG
CTAACTGTTTTTCAAAGTTTTCGGATGCCGCTCGACTCTTAAATTTTTAT
CAACTATGGCTCGATGATTTGTTCCCTCGTGCGAAGTTCGCCGATGGATT
GGCTATGATAGAGAAACTGGGTCACTCGAAACGCTTGCAGACGATGCGAA
GAGAATGGATAGACGAGGAAAAGCCGAGACTTTCCGCAGCTGACTCTGAA
GATGCGCAACAAGCGAAATCTTCGAGCCCACATACCCGTGACAATAGTAT
GCCTATTGGGCATCTTGAAAAAGCCAACGCTATCATAGGCCGAGGAGATA
ACGTGGCACAGGCGCCCCCAACACAGGGCCTTGGAGAGCCATCTTCACTT
CTGCTAGGAGGCATTCTACAACAGGAGGATTTGTTTGTGTCTGATGATGA
AAGTGTTCCAAGGGAAATCATAGAAGAAGGTGCTCATGAAAATAATGATG
ATGATGATGATGATGATGAGCTGGAAGCACTTCTTCGGGAGCACGAGGAT
GGTTTTATTGGTAACAATAATCTGGCAGGATCAGATATAAGGGCTTGACT
CAGTAG back to topCoding sequence (CDS) from alignment at NKJJ01000011.1:1726982..1727887+ >CAN33_18820-T1 ID=CAN33_18820-T1|Name=CAN33_18820-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2580bp|location=Sequence derived from alignment at NKJJ01000011.1:1726982..1727887+ (Aspergillus niger FDAARGOS_311)
ATGGATCAGGATGATACATTGTTCGATTATGATGCCGGCTTAGAGGGCAC
ATTGCAAGATATAGCTGTGGATCCCAAGAGGGATGAACCTATTGCTGCAC
CAGTATTAGGGCTGGATGAAAAGGTCACAATCACTAAGCAGCGACGATTT
ACAGTCAAGTTGGATGAGAGCCGGTTACTGTCACACGCCGGAATACCAAA
ACTGCGTTCTACAGCGAAGTCGAAACTGAAATTCAAAGGCAAAGGGCATG
AGTTTTCGGATGCCGCTCGACTCTTAAATTTTTATCAACTATGGCTCGAT
GATTTGTTCCCTCGTGCGAAGTTCGCCGATGGATTGGCTATGATAGAGAA
ACTGGGTCACTCGAAACGCTTGCAGACGATGCGAAGAGAATGGATAGACG
AGGAAAAGCCGAGACTTTCCGCAGCTGACTCTGAAGATGCGCAACAAGCG
AAATCTTCGAGCCCACATACCCGTGACAATAGTATGCCTATTGGGCATCT
TGAAAAAGCCAACGCTATCATAGGCCGAGGAGATAACGTGGCACAGGCGC
CCCCAACACAGGGCCTTGGAGAGCCATCTTCACTTCTGCTAGGAGGCATT
CTACAACAGGAGGATTTGATCAGATATAAGGGCTTGACTCAGTAGATGGA
TCAGGATGATACATTGTTCGATTATGATGCCGGCTTAGAGGGCACATTGC
AAGATATAGCTGTGGATCCCAAGAGGGATGAACCTATTGCTGCACCAGTA
TTAGGGCTGGATGAAAAGGTCACAATCACTAAGCAGCGACGATTTACAGT
CAAGTTGGATGAGAGCCGGTTACTGTCACACGCCGGAATACCAAAACTGC
GTTCTACAGCGAAGTCGAAACTGAAATTCAAAGGCAAAGGGCATGAGTTT
TCGGATGCCGCTCGACTCTTAAATTTTTATCAACTATGGCTCGATGATTT
GTTCCCTCGTGCGAAGTTCGCCGATGGATTGGCTATGATAGAGAAACTGG
GTCACTCGAAACGCTTGCAGACGATGCGAAGAGAATGGATAGACGAGGAA
AAGCCGAGACTTTCCGCAGCTGACTCTGAAGATGCGCAACAAGCGAAATC
TTCGAGCCCACATACCCGTGACAATAGTATGCCTATTGGGCATCTTGAAA
AAGCCAACGCTATCATAGGCCGAGGAGATAACGTGGCACAGGCGCCCCCA
ACACAGGGCCTTGGAGAGCCATCTTCACTTCTGCTAGGAGGCATTCTACA
ACAGGAGGATTTGATCAGATATAAGGGCTTGACTCAGTAGATGGATCAGG
ATGATACATTGTTCGATTATGATGCCGGCTTAGAGGGCACATTGCAAGAT
ATAGCTGTGGATCCCAAGAGGGATGAACCTATTGCTGCACCAGTATTAGG
GCTGGATGAAAAGGTCACAATCACTAAGCAGCGACGATTTACAGTCAAGT
TGGATGAGAGCCGGTTACTGTCACACGCCGGAATACCAAAACTGCGTTCT
ACAGCGAAGTCGAAACTGAAATTCAAAGGCAAAGGGCATGAGTTTTCGGA
TGCCGCTCGACTCTTAAATTTTTATCAACTATGGCTCGATGATTTGTTCC
CTCGTGCGAAGTTCGCCGATGGATTGGCTATGATAGAGAAACTGGGTCAC
TCGAAACGCTTGCAGACGATGCGAAGAGAATGGATAGACGAGGAAAAGCC
GAGACTTTCCGCAGCTGACTCTGAAGATGCGCAACAAGCGAAATCTTCGA
GCCCACATACCCGTGACAATAGTATGCCTATTGGGCATCTTGAAAAAGCC
AACGCTATCATAGGCCGAGGAGATAACGTGGCACAGGCGCCCCCAACACA
GGGCCTTGGAGAGCCATCTTCACTTCTGCTAGGAGGCATTCTACAACAGG
AGGATTTGATCAGATATAAGGGCTTGACTCAGTAGATGGATCAGGATGAT
ACATTGTTCGATTATGATGCCGGCTTAGAGGGCACATTGCAAGATATAGC
TGTGGATCCCAAGAGGGATGAACCTATTGCTGCACCAGTATTAGGGCTGG
ATGAAAAGGTCACAATCACTAAGCAGCGACGATTTACAGTCAAGTTGGAT
GAGAGCCGGTTACTGTCACACGCCGGAATACCAAAACTGCGTTCTACAGC
GAAGTCGAAACTGAAATTCAAAGGCAAAGGGCATGAGTTTTCGGATGCCG
CTCGACTCTTAAATTTTTATCAACTATGGCTCGATGATTTGTTCCCTCGT
GCGAAGTTCGCCGATGGATTGGCTATGATAGAGAAACTGGGTCACTCGAA
ACGCTTGCAGACGATGCGAAGAGAATGGATAGACGAGGAAAAGCCGAGAC
TTTCCGCAGCTGACTCTGAAGATGCGCAACAAGCGAAATCTTCGAGCCCA
CATACCCGTGACAATAGTATGCCTATTGGGCATCTTGAAAAAGCCAACGC
TATCATAGGCCGAGGAGATAACGTGGCACAGGCGCCCCCAACACAGGGCC
TTGGAGAGCCATCTTCACTTCTGCTAGGAGGCATTCTACAACAGGAGGAT
TTGATCAGATATAAGGGCTTGACTCAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0048478 | replication fork protection |
| GO:0006974 | cellular response to DNA damage stimulus |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR012923 |
| DBxref | PFAM:PF07962 |
| Product | Replication Fork Protection Component Swi3 family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000011.1 | supercontig | NKJJ01000011.1:1726982..1727887 + |
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