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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000004.1:1184511..1185500- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_1940-T1 ID=CAN33_1940-T1|Name=CAN33_1940-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=990bp|location=Sequence derived from alignment at NKJJ01000004.1:1184511..1185500- (Aspergillus niger FDAARGOS_311)
ATGAATAATATTCGCCAGATCCAAGCGCTCAATAAACGCGAGCTCGAAAA
TGCCATGTATGTCATGCTTATCTTCAACCCGGCTTATTGGTTTCTCTGCT
AATCTTTGTGGACATCTCAGACCCCCGGAAGCTTCCTGGCACGCAGACTA
CAGAGATACCGCATACATCTACATCGGTGGACTACCATACGACTTGTCCG
AGGGTGATATTGTAACCATCTTTTCGCAGTACGGCGAGCCCGTGCACATC
AATCTCGTGCGCGATAAAGAGACTGGAAAGAGTCGGGGTTTCGCCTTTCT
GAAGTACGAAGATCAGCGCAGTACAGATCTCGCAGTCGACAATCTTGGTG
GGGCAACAGTTCTAGGGAGAGTGCTGCGTGTGGACCACGTGAGGTACAAG
CGGCGCGATGACGAGGAGGAAACAGACAATGTCGCAAAGCTCATGGGCGA
TACGACTAGCAAGGATCATGATGACAGAGATACAGATGACGAACGGAGAA
GACGGAGGAAGAGAAGGGGAAGTGAATCAAGGGAAGAGGAGCCCGCCAGA
CGGCCTCTGCTCAAGGAGGAGATCGAGCTACAGGAGCTGATCAAGAATCA
TGACGAGGAAGATCCGATGAAGGAATTCCTTATTGAAGAGAAGAAAGAGG
AGGTCGCACTCGCCTTGGAGAAAATGCGCAGCAGCGAGAAGTCATCTCGG
AGACGTGACAGCCGTGAGAGATCAAGCCGCCATCACCGTTCTCACCGTCG
GAGACACGACGACGATCGAGACTCAGAGAGAAGACGCAGAGATCGGTCGC
CCAGAAGGGAAGAGCGATCTCATAGAGCTAGATCTCCATCTAGAAGGGAG
AGATCCGACAGAGAGAGGACGCCGGTCGCGTCGCGATCGCCCGACTCCCG
ACGCTACAGAGATAGACATGATCGACACCGTTAAATGTCTGGCAAAACTA
TCTAAATATTGAAATTGCTAATGAGGGCTAAGTCTCTTAA back to topCoding sequence (CDS) from alignment at NKJJ01000004.1:1184511..1185500- >CAN33_1940-T1 ID=CAN33_1940-T1|Name=CAN33_1940-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1971bp|location=Sequence derived from alignment at NKJJ01000004.1:1184511..1185500- (Aspergillus niger FDAARGOS_311)
TCTCTTAAACCCCCGGAAGCTTCCTGGCACGCAGACTACAGAGATACCGC
ATACATCTACATCGGTGGACTACCATACGACTTGTCCGAGGGTGATATTG
TAACCATCTTTTCGCAGTACGGCGAGCCCGTGCACATCAATCTCGTGCGC
GATAAAGAGACTGGAAAGAGTCGGGGTTTCGCCTTTCTGAAGTACGAAGA
TCAGCGCAGTACAGATCTCGCAGTCGACAATCTTGGTGGGGCAACAGTTC
TAGGGAGAGTGCTGCGTGTGGACCACGTGAGGTACAAGCGGCGCGATGAC
GAGGAGGAAACAGACAATGTCGCAAAGCTCATGGGCGATACGACTAGCAA
GGATCATGATGACAGAGATACAGATGACGAACGGAGAAGACGGAGGAAGA
GAAGGGGAAGTGAATCAAGGGAAGAGGAGCCCGCCAGACGGCCTCTGCTC
AAGGAGGAGATCGAGCTACAGGAGCTGATCAAGAATCATGACGAGGAAGA
TCCGATGAAGGAATTCCTTATTGAAGAGAAGAAAGAGGAGGTCGCACTCG
CCTTGGAGAAAATGCGCAGCAGCGAGAAGTCATCTCGGAGACGTGACAGC
CATGAATAATATTCGCCAGATCCAAGCGCTCAATAAACGCGAGCTCGAAA
ATGCCATTCTCTTAAACCCCCGGAAGCTTCCTGGCACGCAGACTACAGAG
ATACCGCATACATCTACATCGGTGGACTACCATACGACTTGTCCGAGGGT
GATATTGTAACCATCTTTTCGCAGTACGGCGAGCCCGTGCACATCAATCT
CGTGCGCGATAAAGAGACTGGAAAGAGTCGGGGTTTCGCCTTTCTGAAGT
ACGAAGATCAGCGCAGTACAGATCTCGCAGTCGACAATCTTGGTGGGGCA
ACAGTTCTAGGGAGAGTGCTGCGTGTGGACCACGTGAGGTACAAGCGGCG
CGATGACGAGGAGGAAACAGACAATGTCGCAAAGCTCATGGGCGATACGA
CTAGCAAGGATCATGATGACAGAGATACAGATGACGAACGGAGAAGACGG
AGGAAGAGAAGGGGAAGTGAATCAAGGGAAGAGGAGCCCGCCAGACGGCC
TCTGCTCAAGGAGGAGATCGAGCTACAGGAGCTGATCAAGAATCATGACG
AGGAAGATCCGATGAAGGAATTCCTTATTGAAGAGAAGAAAGAGGAGGTC
GCACTCGCCTTGGAGAAAATGCGCAGCAGCGAGAAGTCATCTCGGAGACG
TGACAGCCATGAATAATATTCGCCAGATCCAAGCGCTCAATAAACGCGAG
CTCGAAAATGCCATTCTCTTAAACCCCCGGAAGCTTCCTGGCACGCAGAC
TACAGAGATACCGCATACATCTACATCGGTGGACTACCATACGACTTGTC
CGAGGGTGATATTGTAACCATCTTTTCGCAGTACGGCGAGCCCGTGCACA
TCAATCTCGTGCGCGATAAAGAGACTGGAAAGAGTCGGGGTTTCGCCTTT
CTGAAGTACGAAGATCAGCGCAGTACAGATCTCGCAGTCGACAATCTTGG
TGGGGCAACAGTTCTAGGGAGAGTGCTGCGTGTGGACCACGTGAGGTACA
AGCGGCGCGATGACGAGGAGGAAACAGACAATGTCGCAAAGCTCATGGGC
GATACGACTAGCAAGGATCATGATGACAGAGATACAGATGACGAACGGAG
AAGACGGAGGAAGAGAAGGGGAAGTGAATCAAGGGAAGAGGAGCCCGCCA
GACGGCCTCTGCTCAAGGAGGAGATCGAGCTACAGGAGCTGATCAAGAAT
CATGACGAGGAAGATCCGATGAAGGAATTCCTTATTGAAGAGAAGAAAGA
GGAGGTCGCACTCGCCTTGGAGAAAATGCGCAGCAGCGAGAAGTCATCTC
GGAGACGTGACAGCCATGAATAATATTCGCCAGATCCAAGCGCTCAATAA
ACGCGAGCTCGAAAATGCCAT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| Product | RNA recognition motif family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000004.1 | supercontig | NKJJ01000004.1:1184511..1185500 - |
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