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CAN33_19490-T1, CAN33_19490-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_19490-T1
Unique NameCAN33_19490-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000011.1:2116611..2117821-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_19490-T1 ID=CAN33_19490-T1|Name=CAN33_19490-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1211bp|location=Sequence derived from alignment at NKJJ01000011.1:2116611..2117821- (Aspergillus niger FDAARGOS_311)
ATGCCTCCTCCACAGATCAAGCAGGATCTGAACCGGTCCGGATGGGAGAC
CACTGACTTCCCCTCCGTGTGCGAGAACTGCCTGCCCGACAATCCTTACG
TTCAGATGCTCAAGGAAGACCATGGCGCAGAATGCAAGATTGTAGGCAAC
CCTATCCTCAATCACACAAACATATGACACTAACAGATACCCAGTGCACG
CGTCCTTTCACCATCTTCCGCTGGAAAGCCGACCGCACCGCGCGCCAGAA
GCGTACTGCCATCTGCTTGACCTGCGCGCGGTTGAAGAACTGCTGTCAAT
GCTGTATGCTGGATCTGTCCTTCGGGCTGCCGATCGTCGTTCGTGATGCT
GCTTTGAAGATGGTCGCTCCAGGTCCCGAAAGCACCATCAACCGCGAATA
CTACGCACAAGGTCACGAGAAGGAGATCGAAGAGGGGCGTGGCGCGGTGG
AGGAATACGAGAAGACGGACGAGAAAGCTCGGGAGCTGCTTCGGAGACTC
GCCAACAGTGAACCCTACTACAGGAAGCCCCGCCAGATAGAGGCCGCACC
CCAAGACGAGGAGGGCGCGAGTGCAGGGCCCAGCGACGCACCGGTTGTAC
ACAGCCGTTACGGGAATGGTCCGGGGCCCATTCGGACGAGCGAAAGCAGG
AGGGGAACGCCACTTCCGGGTAGAGGACGAGGAGGTATGCGTGGTGGTCG
TGGTGGCCGACCATTCCCTAGCGCCGCTCAGGTCCCCCCATCGGCAGAAG
ATATCCTACCGCCCGCGGACCCGAATATCACATCGCTCTTTGTTACTGGT
GTCGAGGACGATCTTCCAGAACACACGCTGCGGACTTTCTTCACACAGTT
TGGACAGTTGCGGTCGCTCATTTGCTCCCACCGTGCTCACTCTGCATTCG
TCAACTTCGCCACTCGGGAAGGTGCTGAGGCGGCTGCCAAGCAGTGCCAG
GGTCGGGCTGTCATCCAGGGCTGCCCTCTGCGCGTTCGCTGGGGTAAGCC
CAAGCCGTTGGATAACATGGATCGGGAGGAACGCTTGAAGAATGCGCGGG
AAGGTCGGCAGGCGGCAGGCCCGCGGGGAGCCGATTCTGGAAAGAAGGCC
ATCACAGCTGCCGGAGAGGAGATTGGCAAAGAGCAAAAACAACGGAGTTA
TGCTGTCGCCCCACCCCCGGGCGCTGGAGAGGTCCAGTACTCCAGTTTGT
CTGGTGATTGA
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Coding sequence (CDS) from alignment at NKJJ01000011.1:2116611..2117821-

>CAN33_19490-T1 ID=CAN33_19490-T1|Name=CAN33_19490-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2316bp|location=Sequence derived from alignment at NKJJ01000011.1:2116611..2117821- (Aspergillus niger FDAARGOS_311)
TGCACGCGTCCTTTCACCATCTTCCGCTGGAAAGCCGACCGCACCGCGCG
CCAGAAGCGTACTGCCATCTGCTTGACCTGCGCGCGGTTGAAGAACTGCT
GTCAATGCTGTATGCTGGATCTGTCCTTCGGGCTGCCGATCGTCGTTCGT
GATGCTGCTTTGAAGATGGTCGCTCCAGGTCCCGAAAGCACCATCAACCG
CGAATACTACGCACAAGGTCACGAGAAGGAGATCGAAGAGGGGCGTGGCG
CGGTGGAGGAATACGAGAAGACGGACGAGAAAGCTCGGGAGCTGCTTCGG
AGACTCGCCAACAGTGAACCCTACTACAGGAAGCCCCGCCAGATAGAGGC
CGCACCCCAAGACGAGGAGGGCGCGAGTGCAGGGCCCAGCGACGCACCGG
TTGTACACAGCCGTTACGGGAATGGTCCGGGGCCCATTCGGACGAGCGAA
AGCAGGAGGGGAACGCCACTTCCGGGTAGAGGACGAGGAGGTATGCGTGG
TGGTCGTGGTGGCCGACCATTCCCTAGCGCCGCTCAGGTCCCCCCATCGG
CAGAAGATATCCTACCGCCCGCGGACCCGAATATCACATCGCTCTTTGTT
ACTGGTGTCGAGGACGATCTTCCAGAACACACGCTGCGGACTTTCTTCAC
ACAGTTTGGACAGTTGCGGTCGCTCATTTGCTCCCACCGTGCTCACTCTG
CATTCGTCAACTTCGCCACTCGGGAAGGTGCTGAGGCGGCTGCCAAGCAG
TGCCAGGGTCGGGCTGTCATCCAGGGCTGCCCTCTGCGCGTTCGCTGGGG
TAAGCCCAAGCCGTTGGATAACATGGATCGGGAGGAACGCTTGAAGAATG
CGCGGGAAGGTCGGCAGGCGGCAGGCCCGCGGGGAGCCGATTCTGGAAAG
AAGGCCATCACAGCTGCCGGAGAGGAGATTGGCAAAGAGCAAAAACAACG
GAGTTATGCTGTCGCCCCACCCCCGGGCGCTGGAGAGGTCCAGTACTCCA
GTTTGTCTGGTGATTGAATGCCTCCTCCACAGATCAAGCAGGATCTGAAC
CGGTCCGGATGGGAGACCACTGACTTCCCCTCCGTGTGCGAGAACTGCCT
GCCCGACAATCCTTACGTTCAGATGCTCAAGGAAGACCATGGCGCAGAAT
GCAAGATTTGCACGCGTCCTTTCACCATCTTCCGCTGGAAAGCCGACCGC
ACCGCGCGCCAGAAGCGTACTGCCATCTGCTTGACCTGCGCGCGGTTGAA
GAACTGCTGTCAATGCTGTATGCTGGATCTGTCCTTCGGGCTGCCGATCG
TCGTTCGTGATGCTGCTTTGAAGATGGTCGCTCCAGGTCCCGAAAGCACC
ATCAACCGCGAATACTACGCACAAGGTCACGAGAAGGAGATCGAAGAGGG
GCGTGGCGCGGTGGAGGAATACGAGAAGACGGACGAGAAAGCTCGGGAGC
TGCTTCGGAGACTCGCCAACAGTGAACCCTACTACAGGAAGCCCCGCCAG
ATAGAGGCCGCACCCCAAGACGAGGAGGGCGCGAGTGCAGGGCCCAGCGA
CGCACCGGTTGTACACAGCCGTTACGGGAATGGTCCGGGGCCCATTCGGA
CGAGCGAAAGCAGGAGGGGAACGCCACTTCCGGGTAGAGGACGAGGAGGT
ATGCGTGGTGGTCGTGGTGGCCGACCATTCCCTAGCGCCGCTCAGGTCCC
CCCATCGGCAGAAGATATCCTACCGCCCGCGGACCCGAATATCACATCGC
TCTTTGTTACTGGTGTCGAGGACGATCTTCCAGAACACACGCTGCGGACT
TTCTTCACACAGTTTGGACAGTTGCGGTCGCTCATTTGCTCCCACCGTGC
TCACTCTGCATTCGTCAACTTCGCCACTCGGGAAGGTGCTGAGGCGGCTG
CCAAGCAGTGCCAGGGTCGGGCTGTCATCCAGGGCTGCCCTCTGCGCGTT
CGCTGGGGTAAGCCCAAGCCGTTGGATAACATGGATCGGGAGGAACGCTT
GAAGAATGCGCGGGAAGGTCGGCAGGCGGCAGGCCCGCGGGGAGCCGATT
CTGGAAAGAAGGCCATCACAGCTGCCGGAGAGGAGATTGGCAAAGAGCAA
AAACAACGGAGTTATGCTGTCGCCCCACCCCCGGGCGCTGGAGAGGTCCA
GTACTCCAGTTTGTCTGGTGATTGAATGCCTCCTCCACAGATCAAGCAGG
ATCTGAACCGGTCCGGATGGGAGACCACTGACTTCCCCTCCGTGTGCGAG
AACTGCCTGCCCGACAATCCTTACGTTCAGATGCTCAAGGAAGACCATGG
CGCAGAATGCAAGATT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SLT11CAN33_19490Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_19490-T1CAN33_19490-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_19490-T1.cdsCAN33_19490-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_19490-T1.exon2CAN33_19490-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_19490-T1.exon1CAN33_19490-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09263BDA
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR034356
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000504
DBxrefPFAM:PF00076
ProductPre-mRNA-splicing factor slt11
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000011.1supercontigNKJJ01000011.1:2116611..2117821 -
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