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CAN33_20460-T1, CAN33_20460-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_20460-T1
Unique NameCAN33_20460-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000011.1:2696713..2697521-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_20460-T1 ID=CAN33_20460-T1|Name=CAN33_20460-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=809bp|location=Sequence derived from alignment at NKJJ01000011.1:2696713..2697521- (Aspergillus niger FDAARGOS_311)
ATGGCCCCTCTCGTCTCCTCCCTGGCCCTGCGCACGCTCCGGACCCTGGT
CCAGCGTCCCGCCGCCATTAAATCCACCTCCTGCTCCATCACCACCCTCG
CCGCCGCCGCTCCCCGACGACCTTTCCAGCCTGTTCTCCGCACGCCCACC
GCAGTCGCTGCTGCTGCTGCTGCACGCAAGACCTCCATCCCCTCTTCCTC
CTCCTCCATCCTCCGGCAATTCTCCACCTCCCCGTTCCGCCAGGCTACCT
ACAACCAAGTGCGGCGCGGATGCCGTGTTGCGCAGCGCGCACGTCGCTCC
CGGTCTCCGGCGCTGATCGGCCGGTCTCAGATGAAGGGAGTGTGTTTGAA
GACGGGTATTACGAAGCCGAAGAAGCCTAACTCCGGTGAGCGGAAGACGG
CGAGAGTGAGGTTGAGTAGTGGGAAGGTGGTTACGGCTTATATTCCTGGT
GAAGGTGAGATCACTTTCCTCCATTCGTTTTTTTGTGGTTCGGGTTGGGG
ATCGGGGGTGAGGAGAATGAGAATAGATGGGGATAATGGAATTGAGCGAG
AGAGGCTAATATCTCTGGTCTGTGTGTAGGACACAATATCCAGCAGCACA
GTGTCGTTATGGTCCGTGGTGGTCGTGTGCCTGATTGTCCTGGTGTGAAG
TACCATTTGGTTCGTGGTGCTATGGATTTGGTAGGTTTACTTTCTGATAT
GGGTTTCCTGGGAATTCGGGGTAGGTTTGCTAACTTCTCTCAGGGTGGTG
TTGCTTCTCGGTTGAACAGTCGGTCCAAGTATGGTACGAAGAAGCCTAAG
AAGGACTAG
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Coding sequence (CDS) from alignment at NKJJ01000011.1:2696713..2697521-

>CAN33_20460-T1 ID=CAN33_20460-T1|Name=CAN33_20460-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2124bp|location=Sequence derived from alignment at NKJJ01000011.1:2696713..2697521- (Aspergillus niger FDAARGOS_311)
GGTGGTGTTGCTTCTCGGTTGAACAGTCGGTCCAAGTATGGTACGAAGAA
GCCTAAGAAGGACTAGGACACAATATCCAGCAGCACAGTGTCGTTATGGT
CCGTGGTGGTCGTGTGCCTGATTGTCCTGGTGTGAAGTACCATTTGGTTC
GTGGTGCTATGGATTTGGCTACCTACAACCAAGTGCGGCGCGGATGCCGT
GTTGCGCAGCGCGCACGTCGCTCCCGGTCTCCGGCGCTGATCGGCCGGTC
TCAGATGAAGGGAGTGTGTTTGAAGACGGGTATTACGAAGCCGAAGAAGC
CTAACTCCGGTGAGCGGAAGACGGCGAGAGTGAGGTTGAGTAGTGGGAAG
GTGGTTACGGCTTATATTCCTGGTGAAGATGGCCCCTCTCGTCTCCTCCC
TGGCCCTGCGCACGCTCCGGACCCTGGTCCAGCGTCCCGCCGCCATTAAA
TCCACCTCCTGCTCCATCACCACCCTCGCCGCCGCCGCTCCCCGACGACC
TTTCCAGCCTGTTCTCCGCACGCCCACCGCAGGTGGTGTTGCTTCTCGGT
TGAACAGTCGGTCCAAGTATGGTACGAAGAAGCCTAAGAAGGACTAGGAC
ACAATATCCAGCAGCACAGTGTCGTTATGGTCCGTGGTGGTCGTGTGCCT
GATTGTCCTGGTGTGAAGTACCATTTGGTTCGTGGTGCTATGGATTTGGC
TACCTACAACCAAGTGCGGCGCGGATGCCGTGTTGCGCAGCGCGCACGTC
GCTCCCGGTCTCCGGCGCTGATCGGCCGGTCTCAGATGAAGGGAGTGTGT
TTGAAGACGGGTATTACGAAGCCGAAGAAGCCTAACTCCGGTGAGCGGAA
GACGGCGAGAGTGAGGTTGAGTAGTGGGAAGGTGGTTACGGCTTATATTC
CTGGTGAAGATGGCCCCTCTCGTCTCCTCCCTGGCCCTGCGCACGCTCCG
GACCCTGGTCCAGCGTCCCGCCGCCATTAAATCCACCTCCTGCTCCATCA
CCACCCTCGCCGCCGCCGCTCCCCGACGACCTTTCCAGCCTGTTCTCCGC
ACGCCCACCGCAGGTGGTGTTGCTTCTCGGTTGAACAGTCGGTCCAAGTA
TGGTACGAAGAAGCCTAAGAAGGACTAGGACACAATATCCAGCAGCACAG
TGTCGTTATGGTCCGTGGTGGTCGTGTGCCTGATTGTCCTGGTGTGAAGT
ACCATTTGGTTCGTGGTGCTATGGATTTGGCTACCTACAACCAAGTGCGG
CGCGGATGCCGTGTTGCGCAGCGCGCACGTCGCTCCCGGTCTCCGGCGCT
GATCGGCCGGTCTCAGATGAAGGGAGTGTGTTTGAAGACGGGTATTACGA
AGCCGAAGAAGCCTAACTCCGGTGAGCGGAAGACGGCGAGAGTGAGGTTG
AGTAGTGGGAAGGTGGTTACGGCTTATATTCCTGGTGAAGATGGCCCCTC
TCGTCTCCTCCCTGGCCCTGCGCACGCTCCGGACCCTGGTCCAGCGTCCC
GCCGCCATTAAATCCACCTCCTGCTCCATCACCACCCTCGCCGCCGCCGC
TCCCCGACGACCTTTCCAGCCTGTTCTCCGCACGCCCACCGCAGGTGGTG
TTGCTTCTCGGTTGAACAGTCGGTCCAAGTATGGTACGAAGAAGCCTAAG
AAGGACTAGGACACAATATCCAGCAGCACAGTGTCGTTATGGTCCGTGGT
GGTCGTGTGCCTGATTGTCCTGGTGTGAAGTACCATTTGGTTCGTGGTGC
TATGGATTTGGCTACCTACAACCAAGTGCGGCGCGGATGCCGTGTTGCGC
AGCGCGCACGTCGCTCCCGGTCTCCGGCGCTGATCGGCCGGTCTCAGATG
AAGGGAGTGTGTTTGAAGACGGGTATTACGAAGCCGAAGAAGCCTAACTC
CGGTGAGCGGAAGACGGCGAGAGTGAGGTTGAGTAGTGGGAAGGTGGTTA
CGGCTTATATTCCTGGTGAAGATGGCCCCTCTCGTCTCCTCCCTGGCCCT
GCGCACGCTCCGGACCCTGGTCCAGCGTCCCGCCGCCATTAAATCCACCT
CCTGCTCCATCACCACCCTCGCCGCCGCCGCTCCCCGACGACCTTTCCAG
CCTGTTCTCCGCACGCCCACCGCA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_20460CAN33_20460Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_20460-T1CAN33_20460-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_20460-T1.cdsCAN33_20460-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_20460-T1.exon4CAN33_20460-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_20460-T1.exon3CAN33_20460-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_20460-T1.exon2CAN33_20460-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_20460-T1.exon1CAN33_20460-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG092653KS
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR005679
DBxrefInterPro:IPR006032
DBxrefPFAM:PF00164
Productribosomal protein S12
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000011.1supercontigNKJJ01000011.1:2696713..2697521 -
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