You are here

Home

CAN33_20620-T1, CAN33_20620-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_20620-T1
Unique NameCAN33_20620-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000011.1:2789091..2790110+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_20620-T1 ID=CAN33_20620-T1|Name=CAN33_20620-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1020bp|location=Sequence derived from alignment at NKJJ01000011.1:2789091..2790110+ (Aspergillus niger FDAARGOS_311)
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGTATGTTGTCCTGGAGTGCTTGGTGC
GATGTCCCGGCTTAGTAGCGCTAACTTTTTGCTGTATAGGCCGTATCCCC
ACCGATACCGCCAAGGAGTCTCGCATCTACCCTCTGCCTCACACCTATGT
CGTCAAGGACCTGGTTCCCGATTTGACCTACTTCTACAAGCAGTACAAGT
CGATCAAGCCTTACCTGCAGCGCGACACCCCGACCGCGGATGTAAGTGTT
GACAGCGTGTGCGAGCGATGTGGGATTTTTACTGATAAATATATAGGGTC
TCGAGAACCGCCAGAGCCCCGAGGAGCGTAAGAAGCTGGACGGTCTGTAC
GAGTGCATTCTGTGCGCTTGCTGCTCTACCTCCTGCCCCTCGTACTGGTG
GAACAGCGAGGAGTACCTTGGACCCGCTATCCTCCTCCAGTCCTACCGTT
GGTTGGCCGATTCCCGTGACGAGAAGACCGCCGAGCGTAAGGCCGCTCTC
GACAACAGCATGAGCGTGTACCGTTGCCACACCATTCTTAACTGCTCGCG
GACTTGCCCCAAGGGCCTGAACCCCGCACGGGCCATTGCGGAGATCAAGA
AGATGATGACTGCTCATTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000011.1:2789091..2790110+

>CAN33_20620-T1 ID=CAN33_20620-T1|Name=CAN33_20620-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2700bp|location=Sequence derived from alignment at NKJJ01000011.1:2789091..2790110+ (Aspergillus niger FDAARGOS_311)
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006099tricarboxylic acid cycle
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
GO:0009055electron transfer activity
GO:0051536iron-sulfur cluster binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SDH2CAN33_20620Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_20620-T1.exon1CAN33_20620-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_20620-T1.exon2CAN33_20620-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_20620-T1.exon3CAN33_20620-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_20620-T1.cdsCAN33_20620-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_20620-T1CAN33_20620-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263X1F
DBxrefInterPro:IPR036010
DBxrefInterPro:IPR017896
DBxrefInterPro:IPR001041
DBxrefInterPro:IPR017900
DBxrefInterPro:IPR006058
DBxrefInterPro:IPR012675
DBxrefInterPro:IPR004489
DBxrefInterPro:IPR009051
DBxrefInterPro:IPR025192
DBxrefPFAM:PF13183
DBxrefPFAM:PF13534
DBxrefPFAM:PF13237
DBxrefPFAM:PF13085
Product subunit B
Productsuccinate dehydrogenase complex
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000011.1supercontigNKJJ01000011.1:2789091..2790110 +
Powered by Drupal