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CAN33_20800-T1, CAN33_20800-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_20800-T1
Unique NameCAN33_20800-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000011.1:2903636..2904467+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_20800-T1 ID=CAN33_20800-T1|Name=CAN33_20800-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=832bp|location=Sequence derived from alignment at NKJJ01000011.1:2903636..2904467+ (Aspergillus niger FDAARGOS_311)
ATGCCTCGTTCCAAGCGTGCCCGCGTCGTGCACGAGTCCAAGACCACCAA
AAAGTCCCACAAGGAACAGACCCGTCGCCTGTACGCTAACATCCGGGAAT
GCATTGAGAAGTACGACCACCTGTTCGTCTTCGGCGTGGACAACATGCGC
AACACCTATCTGAAGGATGTCCGTACCGAGTTCGCCGATAGCCGGTTAGT
CTTCTCTCTCCCCAGCAACCCCCGCCTATCCCCAAGATGCCCCTCCACTC
CAACAACCATGCATGCAAACTAACCACCTGAGCAGTCTCTTCTTCGGCAA
AACCAAGGTCATGGCCGTCGCTCTGGGCCACAACCCCGAAAACGAAGCCG
CGCCCAACCTCCACAAACTCAACCCCTACCTCACCGGCGCCGTCGGTCTC
CTCTTCACCTCCCGCGACCCTCAATCCGTGACCGACTACTTCGAGTCCTT
CCGGCCGCTTGACTTCGCCCGCTCCGGGACAGTTAGTACCCGGGCGTTCT
CGATCCCCAACGGCCAGGTGTATTCGCGGGCCGGAGAGATCCCCGTCTCC
GAGGACGAGCCGCTCAGCCATACCATTGAGCCGGAGTTGCGTAAACTCGG
TGTCCCGACTCGGTTGGTTAAGGGCAAGGTCATGCTGGAGTTGACGGAGG
GTCAGGAGGGATTCCCCGTTTGCAGGGAGGGAGAGGTGCTGGATTCGAGG
CAGACGACGTTGTTGAAGATGTTTGGGGTTGTTATGGCTGAGTTCCATGT
TGCGTTGAAGGCTCATTGGACGAGGGAGTCTGGGGAGGTGGAGATTCTGG
AGAAGGATGAGGCTGGTATGGAGGTTGAGTAA
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Coding sequence (CDS) from alignment at NKJJ01000011.1:2903636..2904467+

>CAN33_20800-T1 ID=CAN33_20800-T1|Name=CAN33_20800-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1482bp|location=Sequence derived from alignment at NKJJ01000011.1:2903636..2904467+ (Aspergillus niger FDAARGOS_311)
ATGCCTCGTTCCAAGCGTGCCCGCGTCGTGCACGAGTCCAAGACCACCAA
AAAGTCCCACAAGGAACAGACCCGTCGCCTGTACGCTAACATCCGGGAAT
GCATTGAGAAGTACGACCACCTGTTCGTCTTCGGCGTGGACAACATGCGC
AACACCTATCTGAAGGATGTCCGTACCGAGTTCGCCGATAGCCGTCTCTT
CTTCGGCAAAACCAAGGTCATGGCCGTCGCTCTGGGCCACAACCCCGAAA
ACGAAGCCGCGCCCAACCTCCACAAACTCAACCCCTACCTCACCGGCGCC
GTCGGTCTCCTCTTCACCTCCCGCGACCCTCAATCCGTGACCGACTACTT
CGAGTCCTTCCGGCCGCTTGACTTCGCCCGCTCCGGGACAGTTAGTACCC
GGGCGTTCTCGATCCCCAACGGCCAGGTGTATTCGCGGGCCGGAGAGATC
CCCGTCTCCGAGGACGAGCCGCTCAGCCATACCATTGAGCCGGAGTTGCG
TAAACTCGGTGTCCCGACTCGGTTGGTTAAGGGCAAGGTCATGCTGGAGT
TGACGGAGGGTCAGGAGGGATTCCCCGTTTGCAGGGAGGGAGAGGTGCTG
GATTCGAGGCAGACGACGTTGTTGAAGATGTTTGGGGTTGTTATGGCTGA
GTTCCATGTTGCGTTGAAGGCTCATTGGACGAGGGAGTCTGGGGAGGTGG
AGATTCTGGAGAAGGATGAGGCTGGTATGGAGGTTGAGTAAATGCCTCGT
TCCAAGCGTGCCCGCGTCGTGCACGAGTCCAAGACCACCAAAAAGTCCCA
CAAGGAACAGACCCGTCGCCTGTACGCTAACATCCGGGAATGCATTGAGA
AGTACGACCACCTGTTCGTCTTCGGCGTGGACAACATGCGCAACACCTAT
CTGAAGGATGTCCGTACCGAGTTCGCCGATAGCCGTCTCTTCTTCGGCAA
AACCAAGGTCATGGCCGTCGCTCTGGGCCACAACCCCGAAAACGAAGCCG
CGCCCAACCTCCACAAACTCAACCCCTACCTCACCGGCGCCGTCGGTCTC
CTCTTCACCTCCCGCGACCCTCAATCCGTGACCGACTACTTCGAGTCCTT
CCGGCCGCTTGACTTCGCCCGCTCCGGGACAGTTAGTACCCGGGCGTTCT
CGATCCCCAACGGCCAGGTGTATTCGCGGGCCGGAGAGATCCCCGTCTCC
GAGGACGAGCCGCTCAGCCATACCATTGAGCCGGAGTTGCGTAAACTCGG
TGTCCCGACTCGGTTGGTTAAGGGCAAGGTCATGCTGGAGTTGACGGAGG
GTCAGGAGGGATTCCCCGTTTGCAGGGAGGGAGAGGTGCTGGATTCGAGG
CAGACGACGTTGTTGAAGATGTTTGGGGTTGTTATGGCTGAGTTCCATGT
TGCGTTGAAGGCTCATTGGACGAGGGAGTCTGGGGAGGTGGAGATTCTGG
AGAAGGATGAGGCTGGTATGGAGGTTGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000027ribosomal large subunit assembly
GO:0042254ribosome biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_20800CAN33_20800Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_20800-T1.exon1CAN33_20800-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_20800-T1.exon2CAN33_20800-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_20800-T1.cdsCAN33_20800-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_20800-T1CAN33_20800-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_10000111.14
NoteantiSMASH:Cluster_10000111.15
NoteBUSCO:EOG09264W46
DBxrefInterPro:IPR033867
DBxrefInterPro:IPR040637
DBxrefInterPro:IPR001790
DBxrefPFAM:PF17777
DBxrefPFAM:PF00466
ProductRibosomal protein L10 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000011.1supercontigNKJJ01000011.1:2903636..2904467 +
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