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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000011.1:2905565..2906952- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_20805-T1 ID=CAN33_20805-T1|Name=CAN33_20805-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1388bp|location=Sequence derived from alignment at NKJJ01000011.1:2905565..2906952- (Aspergillus niger FDAARGOS_311)
ATGACGGACAAGCTCCCCCCTCCGCTTCTGGCGCTCTTCCAACCTCGCCC
GCCTCTGCGTTATGTCACCCCCATCAACCGTGCCCCAGAAGACTGCAAGA
AGAGTAGCATCGGTGGTATTGCGCAGTTCCTTCCTGAGGTGAAGAAGTAT
GAGGAAGAGATCCCATATACGCCTACGGAAAGCTGGATCCAGCGCAAACT
GCGCCAGAAAGTGGAGAAGAAAGAGAACATTAACAAGCAATTGACGGAAG
GCCTCGAGACCTGTATGATCATCGCATCTATTCTGGGCTATATCAGTGTC
AATACTGATGATTTGCTGCAGATGAACCATCCAACGACCAACAAGCACGA
GGCGACCCGTTCAAGACGCTGTTTGTCGCTAGACTGAGCTACGATGTCAA
GGAATCGGACCTGGAACGGGAATTTGGTCGTTTCGGCCCTATTGAACGGG
TACAGTCACAGGCCGAGCGGGCTTGATGGGTTACACGCATCACTGACGTC
TCCCAGATTCGCATCGTGAAAGACACCGTAACGCCAAAGGGCTCGAAGAA
ACCACACAGGGGATATGCTTTTATTGTCTATGAGCGCGAAAAGGATATGA
AAGGTATTGCTACAGATCTAGTCGCCTGTCACTCTGGATTCACACTGGTA
TCGAATCCCCGTACTTCATTGATGCTAACCTAGTTTTCTTTTGTCACGAA
TTCAGCTGCCTACAAGGAAACGGATGGTATCCGCATCAAGGACCGCCGTG
TCTTGGTAGACGTCGAGCGCGGTCGTACAGTCAAGGGATGGAAGCCTCGT
CGCTTTGGTGGTGGTCTTGGAGGTCGTGGTTACACCAAGGCTTTGCCGTC
TCGACCTATCGGCCCTGGCTCTTTCAACGCCCCCTCTGGTCCCGGCGGCT
ATGGTGGTGGATTCCGGGGTGGGTTCGGTGGCCGAGGTGGTTTCAAGGGA
GGATTCCGCGGTGACCGTGGATTTGGTGGGCCCCGCGGGGGTGTTGGATA
CCAAGGTGGTCGCAACGGATTCGGTGGAGGCGGACAGGCTCCCCCCAACG
CCCCTTCAGGTCCGGGAGGCGGACGCAGCGGTGGGTTTGGTGGTCCCCCT
GGCGGCGGCAGATTTGAGCGTGAACCCCGGGGCGCCACTGGCAGCAACAG
AGAACCCATCAGGCCCCGGGACGGGTTTGGCGACCGCGATCGTCGAGACC
GTGATCGGGACCGCGACGGTGACCGTCACCGGGACCGTGATCGGGATAGT
TATCGCTACCGTGACCGCGACCGTGAACGCGACCGCGATCGTGGTGACAG
GTACGGAGGCCGGGGCGACGACTACGGGCGGAAGCGATACCATGAAGATG
ATTCGTATGATGACCCCCGTGCGAAGAGAAGATACTGA back to topCoding sequence (CDS) from alignment at NKJJ01000011.1:2905565..2906952- >CAN33_20805-T1 ID=CAN33_20805-T1|Name=CAN33_20805-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=5220bp|location=Sequence derived from alignment at NKJJ01000011.1:2905565..2906952- (Aspergillus niger FDAARGOS_311)
GTACGGAGGCCGGGGCGACGACTACGGGCGGAAGCGATACCATGAAGATG
ATTCGTATGATGACCCCCGTGCGAAGAGAAGATACTGACTGCCTACAAGG
AAACGGATGGTATCCGCATCAAGGACCGCCGTGTCTTGGTAGACGTCGAG
CGCGGTCGTACAGTCAAGGGATGGAAGCCTCGTCGCTTTGGTGGTGGTCT
TGGAGGTCGTGGTTACACCAAGGCTTTGCCGTCTCGACCTATCGGCCCTG
GCTCTTTCAACGCCCCCTCTGGTCCCGGCGGCTATGGTGGTGGATTCCGG
GGTGGGTTCGGTGGCCGAGGTGGTTTCAAGGGAGGATTCCGCGGTGACCG
TGGATTTGGTGGGCCCCGCGGGGGTGTTGGATACCAAGGTGGTCGCAACG
GATTCGGTGGAGGCGGACAGGCTCCCCCCAACGCCCCTTCAGGTCCGGGA
GGCGGACGCAGCGGTGGGTTTGGTGGTCCCCCTGGCGGCGGCAGATTTGA
GCGTGAACCCCGGGGCGCCACTGGCAGCAACAGAGAACCCATCAGGCCCC
GGGACGGATTCGCATCGTGAAAGACACCGTAACGCCAAAGGGCTCGAAGA
AACCACACAGGGGATATGCTTTTATTGTCTATGAGCGCGAAAAGGATATG
AAAGATGAACCATCCAACGACCAACAAGCACGAGGCGACCCGTTCAAGAC
GCTGTTTGTCGCTAGACTGAGCTACGATGTCAAGGAATCGGACCTGGAAC
GGGAATTTGGTCGTTTCGGCCCTATTGAACGGATGACGGACAAGCTCCCC
CCTCCGCTTCTGGCGCTCTTCCAACCTCGCCCGCCTCTGCGTTATGTCAC
CCCCATCAACCGTGCCCCAGAAGACTGCAAGAAGAGTAGCATCGGTGGTA
TTGCGCAGTTCCTTCCTGAGGTGAAGAAGTATGAGGAAGAGATCCCATAT
ACGCCTACGGAAAGCTGGATCCAGCGCAAACTGCGCCAGAAAGTGGAGAA
GAAAGAGAACATTAACAAGCAATTGACGGAAGGCCTCGAGACCTGTACGG
AGGCCGGGGCGACGACTACGGGCGGAAGCGATACCATGAAGATGATTCGT
ATGATGACCCCCGTGCGAAGAGAAGATACTGACTGCCTACAAGGAAACGG
ATGGTATCCGCATCAAGGACCGCCGTGTCTTGGTAGACGTCGAGCGCGGT
CGTACAGTCAAGGGATGGAAGCCTCGTCGCTTTGGTGGTGGTCTTGGAGG
TCGTGGTTACACCAAGGCTTTGCCGTCTCGACCTATCGGCCCTGGCTCTT
TCAACGCCCCCTCTGGTCCCGGCGGCTATGGTGGTGGATTCCGGGGTGGG
TTCGGTGGCCGAGGTGGTTTCAAGGGAGGATTCCGCGGTGACCGTGGATT
TGGTGGGCCCCGCGGGGGTGTTGGATACCAAGGTGGTCGCAACGGATTCG
GTGGAGGCGGACAGGCTCCCCCCAACGCCCCTTCAGGTCCGGGAGGCGGA
CGCAGCGGTGGGTTTGGTGGTCCCCCTGGCGGCGGCAGATTTGAGCGTGA
ACCCCGGGGCGCCACTGGCAGCAACAGAGAACCCATCAGGCCCCGGGACG
GATTCGCATCGTGAAAGACACCGTAACGCCAAAGGGCTCGAAGAAACCAC
ACAGGGGATATGCTTTTATTGTCTATGAGCGCGAAAAGGATATGAAAGAT
GAACCATCCAACGACCAACAAGCACGAGGCGACCCGTTCAAGACGCTGTT
TGTCGCTAGACTGAGCTACGATGTCAAGGAATCGGACCTGGAACGGGAAT
TTGGTCGTTTCGGCCCTATTGAACGGATGACGGACAAGCTCCCCCCTCCG
CTTCTGGCGCTCTTCCAACCTCGCCCGCCTCTGCGTTATGTCACCCCCAT
CAACCGTGCCCCAGAAGACTGCAAGAAGAGTAGCATCGGTGGTATTGCGC
AGTTCCTTCCTGAGGTGAAGAAGTATGAGGAAGAGATCCCATATACGCCT
ACGGAAAGCTGGATCCAGCGCAAACTGCGCCAGAAAGTGGAGAAGAAAGA
GAACATTAACAAGCAATTGACGGAAGGCCTCGAGACCTGTACGGAGGCCG
GGGCGACGACTACGGGCGGAAGCGATACCATGAAGATGATTCGTATGATG
ACCCCCGTGCGAAGAGAAGATACTGACTGCCTACAAGGAAACGGATGGTA
TCCGCATCAAGGACCGCCGTGTCTTGGTAGACGTCGAGCGCGGTCGTACA
GTCAAGGGATGGAAGCCTCGTCGCTTTGGTGGTGGTCTTGGAGGTCGTGG
TTACACCAAGGCTTTGCCGTCTCGACCTATCGGCCCTGGCTCTTTCAACG
CCCCCTCTGGTCCCGGCGGCTATGGTGGTGGATTCCGGGGTGGGTTCGGT
GGCCGAGGTGGTTTCAAGGGAGGATTCCGCGGTGACCGTGGATTTGGTGG
GCCCCGCGGGGGTGTTGGATACCAAGGTGGTCGCAACGGATTCGGTGGAG
GCGGACAGGCTCCCCCCAACGCCCCTTCAGGTCCGGGAGGCGGACGCAGC
GGTGGGTTTGGTGGTCCCCCTGGCGGCGGCAGATTTGAGCGTGAACCCCG
GGGCGCCACTGGCAGCAACAGAGAACCCATCAGGCCCCGGGACGGATTCG
CATCGTGAAAGACACCGTAACGCCAAAGGGCTCGAAGAAACCACACAGGG
GATATGCTTTTATTGTCTATGAGCGCGAAAAGGATATGAAAGATGAACCA
TCCAACGACCAACAAGCACGAGGCGACCCGTTCAAGACGCTGTTTGTCGC
TAGACTGAGCTACGATGTCAAGGAATCGGACCTGGAACGGGAATTTGGTC
GTTTCGGCCCTATTGAACGGATGACGGACAAGCTCCCCCCTCCGCTTCTG
GCGCTCTTCCAACCTCGCCCGCCTCTGCGTTATGTCACCCCCATCAACCG
TGCCCCAGAAGACTGCAAGAAGAGTAGCATCGGTGGTATTGCGCAGTTCC
TTCCTGAGGTGAAGAAGTATGAGGAAGAGATCCCATATACGCCTACGGAA
AGCTGGATCCAGCGCAAACTGCGCCAGAAAGTGGAGAAGAAAGAGAACAT
TAACAAGCAATTGACGGAAGGCCTCGAGACCTGTACGGAGGCCGGGGCGA
CGACTACGGGCGGAAGCGATACCATGAAGATGATTCGTATGATGACCCCC
GTGCGAAGAGAAGATACTGACTGCCTACAAGGAAACGGATGGTATCCGCA
TCAAGGACCGCCGTGTCTTGGTAGACGTCGAGCGCGGTCGTACAGTCAAG
GGATGGAAGCCTCGTCGCTTTGGTGGTGGTCTTGGAGGTCGTGGTTACAC
CAAGGCTTTGCCGTCTCGACCTATCGGCCCTGGCTCTTTCAACGCCCCCT
CTGGTCCCGGCGGCTATGGTGGTGGATTCCGGGGTGGGTTCGGTGGCCGA
GGTGGTTTCAAGGGAGGATTCCGCGGTGACCGTGGATTTGGTGGGCCCCG
CGGGGGTGTTGGATACCAAGGTGGTCGCAACGGATTCGGTGGAGGCGGAC
AGGCTCCCCCCAACGCCCCTTCAGGTCCGGGAGGCGGACGCAGCGGTGGG
TTTGGTGGTCCCCCTGGCGGCGGCAGATTTGAGCGTGAACCCCGGGGCGC
CACTGGCAGCAACAGAGAACCCATCAGGCCCCGGGACGGATTCGCATCGT
GAAAGACACCGTAACGCCAAAGGGCTCGAAGAAACCACACAGGGGATATG
CTTTTATTGTCTATGAGCGCGAAAAGGATATGAAAGATGAACCATCCAAC
GACCAACAAGCACGAGGCGACCCGTTCAAGACGCTGTTTGTCGCTAGACT
GAGCTACGATGTCAAGGAATCGGACCTGGAACGGGAATTTGGTCGTTTCG
GCCCTATTGAACGGATGACGGACAAGCTCCCCCCTCCGCTTCTGGCGCTC
TTCCAACCTCGCCCGCCTCTGCGTTATGTCACCCCCATCAACCGTGCCCC
AGAAGACTGCAAGAAGAGTAGCATCGGTGGTATTGCGCAGTTCCTTCCTG
AGGTGAAGAAGTATGAGGAAGAGATCCCATATACGCCTACGGAAAGCTGG
ATCCAGCGCAAACTGCGCCAGAAAGTGGAGAAGAAAGAGAACATTAACAA
GCAATTGACGGAAGGCCTCGAGACCTGTACGGAGGCCGGGGCGACGACTA
CGGGCGGAAGCGATACCATGAAGATGATTCGTATGATGACCCCCGTGCGA
AGAGAAGATACTGACTGCCTACAAGGAAACGGATGGTATCCGCATCAAGG
ACCGCCGTGTCTTGGTAGACGTCGAGCGCGGTCGTACAGTCAAGGGATGG
AAGCCTCGTCGCTTTGGTGGTGGTCTTGGAGGTCGTGGTTACACCAAGGC
TTTGCCGTCTCGACCTATCGGCCCTGGCTCTTTCAACGCCCCCTCTGGTC
CCGGCGGCTATGGTGGTGGATTCCGGGGTGGGTTCGGTGGCCGAGGTGGT
TTCAAGGGAGGATTCCGCGGTGACCGTGGATTTGGTGGGCCCCGCGGGGG
TGTTGGATACCAAGGTGGTCGCAACGGATTCGGTGGAGGCGGACAGGCTC
CCCCCAACGCCCCTTCAGGTCCGGGAGGCGGACGCAGCGGTGGGTTTGGT
GGTCCCCCTGGCGGCGGCAGATTTGAGCGTGAACCCCGGGGCGCCACTGG
CAGCAACAGAGAACCCATCAGGCCCCGGGACGGATTCGCATCGTGAAAGA
CACCGTAACGCCAAAGGGCTCGAAGAAACCACACAGGGGATATGCTTTTA
TTGTCTATGAGCGCGAAAAGGATATGAAAGATGAACCATCCAACGACCAA
CAAGCACGAGGCGACCCGTTCAAGACGCTGTTTGTCGCTAGACTGAGCTA
CGATGTCAAGGAATCGGACCTGGAACGGGAATTTGGTCGTTTCGGCCCTA
TTGAACGGATGACGGACAAGCTCCCCCCTCCGCTTCTGGCGCTCTTCCAA
CCTCGCCCGCCTCTGCGTTATGTCACCCCCATCAACCGTGCCCCAGAAGA
CTGCAAGAAGAGTAGCATCGGTGGTATTGCGCAGTTCCTTCCTGAGGTGA
AGAAGTATGAGGAAGAGATCCCATATACGCCTACGGAAAGCTGGATCCAG
CGCAAACTGCGCCAGAAAGTGGAGAAGAAAGAGAACATTAACAAGCAATT
GACGGAAGGCCTCGAGACCT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030619 | U1 snRNA binding |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_10000111.14 |
| Note | antiSMASH:Cluster_10000111.15 |
| Note | BUSCO:EOG09264G1F |
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR034143 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR022023 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF12220 |
| DBxref | PFAM:PF00076 |
| Product | U1 small nuclear ribonucleoprotein of 70kDa MW N terminal family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000011.1 | supercontig | NKJJ01000011.1:2905565..2906952 - |
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