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CAN33_22200-T1, CAN33_22200-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_22200-T1
Unique NameCAN33_22200-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000002.1:245904..246288-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_22200-T1 ID=CAN33_22200-T1|Name=CAN33_22200-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=385bp|location=Sequence derived from alignment at NKJJ01000002.1:245904..246288- (Aspergillus niger FDAARGOS_311)
ATGTCCGCTTCAAATCCCCCCTCACAGTCCGAATACGTGACCCTAGTATC
CGGTGATGGATTCGAATTCGTCATCCCGCGCAGCACAGCCTGCGTGTCGG
GGACGATACGTCGCATGTTAGAGCCGTCTAGTGAGTCTTGTCTCCTCACA
TGTGTGTTTCAGTGGTGGCACTTGCTAACAACTCCATTACTATATAGGTC
GCTTCTCGGAATCCGTTACCGGTCGATGCGTCCTCGAGAATATTAGCGGT
ATTGTGCTTGAAAAAGTATGCGAGTATTTCTGCTACAATGAGAAGAATAA
GAACCAGACATATGTTCCGGATATGGATATCCCGCCGGAGTTGTGTTTGG
AATTGTTGATGGCGGCGGATTATTTGGATGCGTGA
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Coding sequence (CDS) from alignment at NKJJ01000002.1:245904..246288-

>CAN33_22200-T1 ID=CAN33_22200-T1|Name=CAN33_22200-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=636bp|location=Sequence derived from alignment at NKJJ01000002.1:245904..246288- (Aspergillus niger FDAARGOS_311)
GTCGCTTCTCGGAATCCGTTACCGGTCGATGCGTCCTCGAGAATATTAGC
GGTATTGTGCTTGAAAAAGTATGCGAGTATTTCTGCTACAATGAGAAGAA
TAAGAACCAGACATATGTTCCGGATATGGATATCCCGCCGGAGTTGTGTT
TGGAATTGTTGATGGCGGCGGATTATTTGGATGCGTGAATGTCCGCTTCA
AATCCCCCCTCACAGTCCGAATACGTGACCCTAGTATCCGGTGATGGATT
CGAATTCGTCATCCCGCGCAGCACAGCCTGCGTGTCGGGGACGATACGTC
GCATGTTAGAGCCGTCTAGTCGCTTCTCGGAATCCGTTACCGGTCGATGC
GTCCTCGAGAATATTAGCGGTATTGTGCTTGAAAAAGTATGCGAGTATTT
CTGCTACAATGAGAAGAATAAGAACCAGACATATGTTCCGGATATGGATA
TCCCGCCGGAGTTGTGTTTGGAATTGTTGATGGCGGCGGATTATTTGGAT
GCGTGAATGTCCGCTTCAAATCCCCCCTCACAGTCCGAATACGTGACCCT
AGTATCCGGTGATGGATTCGAATTCGTCATCCCGCGCAGCACAGCCTGCG
TGTCGGGGACGATACGTCGCATGTTAGAGCCGTCTA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_22200CAN33_22200Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_22200-T1CAN33_22200-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_22200-T1.cdsCAN33_22200-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_22200-T1.exon2CAN33_22200-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_22200-T1.exon1CAN33_22200-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09265QTV
DBxrefInterPro:IPR011333
DBxrefInterPro:IPR016073
DBxrefInterPro:IPR001232
DBxrefPFAM:PF03931
ProductSkp1 family tetramerization domain family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000002.1supercontigNKJJ01000002.1:245904..246288 -
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