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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000002.1:1078336..1079979- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_23445-T1 ID=CAN33_23445-T1|Name=CAN33_23445-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1644bp|location=Sequence derived from alignment at NKJJ01000002.1:1078336..1079979- (Aspergillus niger FDAARGOS_311)
ATGAAGCTCCCCATCCTAGTGACTCTATTTATTACTCTGCCCGCGCTTTG
CGTGTCTAGCAAAACTCCTTCGCCGCCTACGATCTCTGCATATCCGAAAT
CTCTAGGGAACTTCAAGCCCGCCTCTGGACGCCAGAACAGCACAAGCAAT
GTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCCCCTGGTATTCTTGC
CGCAGCCCACACTTGCAACAATGGGGGCACCGTTTTCCTACCACCGGGTG
ACTTTGTCGTCGCAACCGCACTGGATCTCACATTTCTAAACAACATCGAT
TTTGCCATCTGGGGCAACATCACTTTCAAAGAGGACCTTGATCTCTGGAC
GACCCAGGCATTTCAATACACATTCCAGACTGCGAGTCTGTTCTGGCGAT
TTGGAGGCAATAACGTGAACATCTATGGCGATGGGAAGGGTGTGATTGAT
GGTGAATGATTCCCTTTTTTTGATGCTGGATTAGTTAGGAAAAGATTATT
GACCTTGATGTTCTAATCTAGGAGCTGGTCAATACTGGTGGAGTGCGATG
GCTGAAGATTCCAGTGTCGTGCGTCCTTGCCTCCTGGGCACAGACGGACT
GCATCATGCCACCATTTCTGGGCTCAAGATGCTCAACTCCCCGAATTGGT
TCAACCTCATTGCGAACTCCACGGACATCCTCATCAGTAATATGACAATG
TTGGTGAAAAGTGAGATATCGGATGCTCCAGCCAAGGTGCGACCTATAAA
TTCACCCCCGATTCCATCTGCTATGGCCTACTGCTACCTGAACCTGACTT
GTACTGTGCTTAGAACACAGATGGCTGGGACATCTATCGCAGCTCAAATA
TCGTGATCCAAGACTCAAGGATAGTCAACACGGACGGTAAGCCATGGCAA
TCCTTGATGGTATTCCCTAAAACGTCACTCATGGTATATTCGCTGCAGAC
TGTGTATCGTTCAAACCCAACTCCACCCAGATTGTCATCCAAAATCTCGA
ATGCACTGGGTCCCACGGTATTTCTGTCGGCAGCCTGGGTCAATACCAAG
GGGAAACGGACATCGTTGAAGATCTGTACATCTATAACATATCCATGACA
GATGCATCAGATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCCTCCTGA
TACGTCAGGCTCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTA
CCTATGAATACATGCAAAGCGAGAATAACGATCACGTCATTTCGGTCTCG
CAGTGCTATGAGTCGAAGAACCAAACGATGTGCGATTCATATCCTGTACG
TACTTACAAGCTCCTGATAGGCAGAAGATTCAATAAAAGGAAAAAGCTGA
TCGGTCTTTCAAAGTCGAAACTCGTGATTGAGGATGTCCTTTTCAAGGAC
TTTAAGGGAACGACATCTAAGAAGTACGATCCTGAGATTGGAGAGTTGAC
ATGTAGTAGTCCGGATGTAGGTTTCTTTGCTGCGACTTTGCATTACAGAT
TGTCATATGGCCATTAACAGGTGCTAGGTCTGCCATAATATCACTGTCCA
AGACATCAGTGTGACACCGCCCAGTGGCAACTCTCCCACTTTCACCTGCA
ACAATATGGGGAATTCGAATCTGGAGGACATTACGTGTGCCTGA back to topCoding sequence (CDS) from alignment at NKJJ01000002.1:1078336..1079979- >CAN33_23445-T1 ID=CAN33_23445-T1|Name=CAN33_23445-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=7830bp|location=Sequence derived from alignment at NKJJ01000002.1:1078336..1079979- (Aspergillus niger FDAARGOS_311)
GTCTGCCATAATATCACTGTCCAAGACATCAGTGTGACACCGCCCAGTGG
CAACTCTCCCACTTTCACCTGCAACAATATGGGGAATTCGAATCTGGAGG
ACATTACGTGTGCCTGATCGAAACTCGTGATTGAGGATGTCCTTTTCAAG
GACTTTAAGGGAACGACATCTAAGAAGTACGATCCTGAGATTGGAGAGTT
GACATGTAGTAGTCCGGATACTGTGTATCGTTCAAACCCAACTCCACCCA
GATTGTCATCCAAAATCTCGAATGCACTGGGTCCCACGGTATTTCTGTCG
GCAGCCTGGGTCAATACCAAGGGGAAACGGACATCGTTGAAGATCTGTAC
ATCTATAACATATCCATGACAGATGCATCAGATGTGGCCCGAATCAAGGT
CTGGCCTGGTGTTCCTCCTGATACGTCAGGCTCAACCAGCGGTGGAGGAC
TAGGCCGCGTCCGCAACGTTACCTATGAATACATGCAAAGCGAGAATAAC
GATCACGTCATTTCGGTCTCGCAGTGCTATGAGTCGAAGAACCAAACGAT
GTGCGATTCATATCCTAACACAGATGGCTGGGACATCTATCGCAGCTCAA
ATATCGTGATCCAAGACTCAAGGATAGTCAACACGGACGGAGCTGGTCAA
TACTGGTGGAGTGCGATGGCTGAAGATTCCAGTGTCGTGCGTCCTTGCCT
CCTGGGCACAGACGGACTGCATCATGCCACCATTTCTGGGCTCAAGATGC
TCAACTCCCCGAATTGGTTCAACCTCATTGCGAACTCCACGGACATCCTC
ATCAGTAATATGACAATGTTGGTGAAAAGTGAGATATCGGATGCTCCAGC
CAAGATGAAGCTCCCCATCCTAGTGACTCTATTTATTACTCTGCCCGCGC
TTTGCGTGTCTAGCAAAACTCCTTCGCCGCCTACGATCTCTGCATATCCG
AAATCTCTAGGGAACTTCAAGCCCGCCTCTGGACGCCAGAACAGCACAAG
CAATGTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCCCCTGGTATTC
TTGCCGCAGCCCACACTTGCAACAATGGGGGCACCGTTTTCCTACCACCG
GGTGACTTTGTCGTCGCAACCGCACTGGATCTCACATTTCTAAACAACAT
CGATTTTGCCATCTGGGGCAACATCACTTTCAAAGAGGACCTTGATCTCT
GGACGACCCAGGCATTTCAATACACATTCCAGACTGCGAGTCTGTTCTGG
CGATTTGGAGGCAATAACGTGAACATCTATGGCGATGGGAAGGGTGTGAT
TGATGGTCTGCCATAATATCACTGTCCAAGACATCAGTGTGACACCGCCC
AGTGGCAACTCTCCCACTTTCACCTGCAACAATATGGGGAATTCGAATCT
GGAGGACATTACGTGTGCCTGATCGAAACTCGTGATTGAGGATGTCCTTT
TCAAGGACTTTAAGGGAACGACATCTAAGAAGTACGATCCTGAGATTGGA
GAGTTGACATGTAGTAGTCCGGATACTGTGTATCGTTCAAACCCAACTCC
ACCCAGATTGTCATCCAAAATCTCGAATGCACTGGGTCCCACGGTATTTC
TGTCGGCAGCCTGGGTCAATACCAAGGGGAAACGGACATCGTTGAAGATC
TGTACATCTATAACATATCCATGACAGATGCATCAGATGTGGCCCGAATC
AAGGTCTGGCCTGGTGTTCCTCCTGATACGTCAGGCTCAACCAGCGGTGG
AGGACTAGGCCGCGTCCGCAACGTTACCTATGAATACATGCAAAGCGAGA
ATAACGATCACGTCATTTCGGTCTCGCAGTGCTATGAGTCGAAGAACCAA
ACGATGTGCGATTCATATCCTAACACAGATGGCTGGGACATCTATCGCAG
CTCAAATATCGTGATCCAAGACTCAAGGATAGTCAACACGGACGGAGCTG
GTCAATACTGGTGGAGTGCGATGGCTGAAGATTCCAGTGTCGTGCGTCCT
TGCCTCCTGGGCACAGACGGACTGCATCATGCCACCATTTCTGGGCTCAA
GATGCTCAACTCCCCGAATTGGTTCAACCTCATTGCGAACTCCACGGACA
TCCTCATCAGTAATATGACAATGTTGGTGAAAAGTGAGATATCGGATGCT
CCAGCCAAGATGAAGCTCCCCATCCTAGTGACTCTATTTATTACTCTGCC
CGCGCTTTGCGTGTCTAGCAAAACTCCTTCGCCGCCTACGATCTCTGCAT
ATCCGAAATCTCTAGGGAACTTCAAGCCCGCCTCTGGACGCCAGAACAGC
ACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCCCCTGG
TATTCTTGCCGCAGCCCACACTTGCAACAATGGGGGCACCGTTTTCCTAC
CACCGGGTGACTTTGTCGTCGCAACCGCACTGGATCTCACATTTCTAAAC
AACATCGATTTTGCCATCTGGGGCAACATCACTTTCAAAGAGGACCTTGA
TCTCTGGACGACCCAGGCATTTCAATACACATTCCAGACTGCGAGTCTGT
TCTGGCGATTTGGAGGCAATAACGTGAACATCTATGGCGATGGGAAGGGT
GTGATTGATGGTCTGCCATAATATCACTGTCCAAGACATCAGTGTGACAC
CGCCCAGTGGCAACTCTCCCACTTTCACCTGCAACAATATGGGGAATTCG
AATCTGGAGGACATTACGTGTGCCTGATCGAAACTCGTGATTGAGGATGT
CCTTTTCAAGGACTTTAAGGGAACGACATCTAAGAAGTACGATCCTGAGA
TTGGAGAGTTGACATGTAGTAGTCCGGATACTGTGTATCGTTCAAACCCA
ACTCCACCCAGATTGTCATCCAAAATCTCGAATGCACTGGGTCCCACGGT
ATTTCTGTCGGCAGCCTGGGTCAATACCAAGGGGAAACGGACATCGTTGA
AGATCTGTACATCTATAACATATCCATGACAGATGCATCAGATGTGGCCC
GAATCAAGGTCTGGCCTGGTGTTCCTCCTGATACGTCAGGCTCAACCAGC
GGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTATGAATACATGCAAAG
CGAGAATAACGATCACGTCATTTCGGTCTCGCAGTGCTATGAGTCGAAGA
ACCAAACGATGTGCGATTCATATCCTAACACAGATGGCTGGGACATCTAT
CGCAGCTCAAATATCGTGATCCAAGACTCAAGGATAGTCAACACGGACGG
AGCTGGTCAATACTGGTGGAGTGCGATGGCTGAAGATTCCAGTGTCGTGC
GTCCTTGCCTCCTGGGCACAGACGGACTGCATCATGCCACCATTTCTGGG
CTCAAGATGCTCAACTCCCCGAATTGGTTCAACCTCATTGCGAACTCCAC
GGACATCCTCATCAGTAATATGACAATGTTGGTGAAAAGTGAGATATCGG
ATGCTCCAGCCAAGATGAAGCTCCCCATCCTAGTGACTCTATTTATTACT
CTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTCGCCGCCTACGATCTC
TGCATATCCGAAATCTCTAGGGAACTTCAAGCCCGCCTCTGGACGCCAGA
ACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCC
CCTGGTATTCTTGCCGCAGCCCACACTTGCAACAATGGGGGCACCGTTTT
CCTACCACCGGGTGACTTTGTCGTCGCAACCGCACTGGATCTCACATTTC
TAAACAACATCGATTTTGCCATCTGGGGCAACATCACTTTCAAAGAGGAC
CTTGATCTCTGGACGACCCAGGCATTTCAATACACATTCCAGACTGCGAG
TCTGTTCTGGCGATTTGGAGGCAATAACGTGAACATCTATGGCGATGGGA
AGGGTGTGATTGATGGTCTGCCATAATATCACTGTCCAAGACATCAGTGT
GACACCGCCCAGTGGCAACTCTCCCACTTTCACCTGCAACAATATGGGGA
ATTCGAATCTGGAGGACATTACGTGTGCCTGATCGAAACTCGTGATTGAG
GATGTCCTTTTCAAGGACTTTAAGGGAACGACATCTAAGAAGTACGATCC
TGAGATTGGAGAGTTGACATGTAGTAGTCCGGATACTGTGTATCGTTCAA
ACCCAACTCCACCCAGATTGTCATCCAAAATCTCGAATGCACTGGGTCCC
ACGGTATTTCTGTCGGCAGCCTGGGTCAATACCAAGGGGAAACGGACATC
GTTGAAGATCTGTACATCTATAACATATCCATGACAGATGCATCAGATGT
GGCCCGAATCAAGGTCTGGCCTGGTGTTCCTCCTGATACGTCAGGCTCAA
CCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTATGAATACATG
CAAAGCGAGAATAACGATCACGTCATTTCGGTCTCGCAGTGCTATGAGTC
GAAGAACCAAACGATGTGCGATTCATATCCTAACACAGATGGCTGGGACA
TCTATCGCAGCTCAAATATCGTGATCCAAGACTCAAGGATAGTCAACACG
GACGGAGCTGGTCAATACTGGTGGAGTGCGATGGCTGAAGATTCCAGTGT
CGTGCGTCCTTGCCTCCTGGGCACAGACGGACTGCATCATGCCACCATTT
CTGGGCTCAAGATGCTCAACTCCCCGAATTGGTTCAACCTCATTGCGAAC
TCCACGGACATCCTCATCAGTAATATGACAATGTTGGTGAAAAGTGAGAT
ATCGGATGCTCCAGCCAAGATGAAGCTCCCCATCCTAGTGACTCTATTTA
TTACTCTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTCGCCGCCTACG
ATCTCTGCATATCCGAAATCTCTAGGGAACTTCAAGCCCGCCTCTGGACG
CCAGAACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAACAGATG
CTGCCCCTGGTATTCTTGCCGCAGCCCACACTTGCAACAATGGGGGCACC
GTTTTCCTACCACCGGGTGACTTTGTCGTCGCAACCGCACTGGATCTCAC
ATTTCTAAACAACATCGATTTTGCCATCTGGGGCAACATCACTTTCAAAG
AGGACCTTGATCTCTGGACGACCCAGGCATTTCAATACACATTCCAGACT
GCGAGTCTGTTCTGGCGATTTGGAGGCAATAACGTGAACATCTATGGCGA
TGGGAAGGGTGTGATTGATGGTCTGCCATAATATCACTGTCCAAGACATC
AGTGTGACACCGCCCAGTGGCAACTCTCCCACTTTCACCTGCAACAATAT
GGGGAATTCGAATCTGGAGGACATTACGTGTGCCTGATCGAAACTCGTGA
TTGAGGATGTCCTTTTCAAGGACTTTAAGGGAACGACATCTAAGAAGTAC
GATCCTGAGATTGGAGAGTTGACATGTAGTAGTCCGGATACTGTGTATCG
TTCAAACCCAACTCCACCCAGATTGTCATCCAAAATCTCGAATGCACTGG
GTCCCACGGTATTTCTGTCGGCAGCCTGGGTCAATACCAAGGGGAAACGG
ACATCGTTGAAGATCTGTACATCTATAACATATCCATGACAGATGCATCA
GATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCCTCCTGATACGTCAGG
CTCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTATGAAT
ACATGCAAAGCGAGAATAACGATCACGTCATTTCGGTCTCGCAGTGCTAT
GAGTCGAAGAACCAAACGATGTGCGATTCATATCCTAACACAGATGGCTG
GGACATCTATCGCAGCTCAAATATCGTGATCCAAGACTCAAGGATAGTCA
ACACGGACGGAGCTGGTCAATACTGGTGGAGTGCGATGGCTGAAGATTCC
AGTGTCGTGCGTCCTTGCCTCCTGGGCACAGACGGACTGCATCATGCCAC
CATTTCTGGGCTCAAGATGCTCAACTCCCCGAATTGGTTCAACCTCATTG
CGAACTCCACGGACATCCTCATCAGTAATATGACAATGTTGGTGAAAAGT
GAGATATCGGATGCTCCAGCCAAGATGAAGCTCCCCATCCTAGTGACTCT
ATTTATTACTCTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTCGCCGC
CTACGATCTCTGCATATCCGAAATCTCTAGGGAACTTCAAGCCCGCCTCT
GGACGCCAGAACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAAC
AGATGCTGCCCCTGGTATTCTTGCCGCAGCCCACACTTGCAACAATGGGG
GCACCGTTTTCCTACCACCGGGTGACTTTGTCGTCGCAACCGCACTGGAT
CTCACATTTCTAAACAACATCGATTTTGCCATCTGGGGCAACATCACTTT
CAAAGAGGACCTTGATCTCTGGACGACCCAGGCATTTCAATACACATTCC
AGACTGCGAGTCTGTTCTGGCGATTTGGAGGCAATAACGTGAACATCTAT
GGCGATGGGAAGGGTGTGATTGATGGTCTGCCATAATATCACTGTCCAAG
ACATCAGTGTGACACCGCCCAGTGGCAACTCTCCCACTTTCACCTGCAAC
AATATGGGGAATTCGAATCTGGAGGACATTACGTGTGCCTGATCGAAACT
CGTGATTGAGGATGTCCTTTTCAAGGACTTTAAGGGAACGACATCTAAGA
AGTACGATCCTGAGATTGGAGAGTTGACATGTAGTAGTCCGGATACTGTG
TATCGTTCAAACCCAACTCCACCCAGATTGTCATCCAAAATCTCGAATGC
ACTGGGTCCCACGGTATTTCTGTCGGCAGCCTGGGTCAATACCAAGGGGA
AACGGACATCGTTGAAGATCTGTACATCTATAACATATCCATGACAGATG
CATCAGATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCCTCCTGATACG
TCAGGCTCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTA
TGAATACATGCAAAGCGAGAATAACGATCACGTCATTTCGGTCTCGCAGT
GCTATGAGTCGAAGAACCAAACGATGTGCGATTCATATCCTAACACAGAT
GGCTGGGACATCTATCGCAGCTCAAATATCGTGATCCAAGACTCAAGGAT
AGTCAACACGGACGGAGCTGGTCAATACTGGTGGAGTGCGATGGCTGAAG
ATTCCAGTGTCGTGCGTCCTTGCCTCCTGGGCACAGACGGACTGCATCAT
GCCACCATTTCTGGGCTCAAGATGCTCAACTCCCCGAATTGGTTCAACCT
CATTGCGAACTCCACGGACATCCTCATCAGTAATATGACAATGTTGGTGA
AAAGTGAGATATCGGATGCTCCAGCCAAGATGAAGCTCCCCATCCTAGTG
ACTCTATTTATTACTCTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTC
GCCGCCTACGATCTCTGCATATCCGAAATCTCTAGGGAACTTCAAGCCCG
CCTCTGGACGCCAGAACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAAC
CAAACAGATGCTGCCCCTGGTATTCTTGCCGCAGCCCACACTTGCAACAA
TGGGGGCACCGTTTTCCTACCACCGGGTGACTTTGTCGTCGCAACCGCAC
TGGATCTCACATTTCTAAACAACATCGATTTTGCCATCTGGGGCAACATC
ACTTTCAAAGAGGACCTTGATCTCTGGACGACCCAGGCATTTCAATACAC
ATTCCAGACTGCGAGTCTGTTCTGGCGATTTGGAGGCAATAACGTGAACA
TCTATGGCGATGGGAAGGGTGTGATTGATG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
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| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
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| GO:0004650 | polygalacturonase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-19) |
| Note | CAZy:GH28 |
| DBxref | InterPro:IPR011050 |
| DBxref | InterPro:IPR000743 |
| DBxref | InterPro:IPR012334 |
| DBxref | PFAM:PF00295 |
| Product | Glycosyl hydrolases family 28 family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000002.1 | supercontig | NKJJ01000002.1:1078336..1079979 - |
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