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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000002.1:1705838..1707036- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_24460-T1 ID=CAN33_24460-T1|Name=CAN33_24460-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1199bp|location=Sequence derived from alignment at NKJJ01000002.1:1705838..1707036- (Aspergillus niger FDAARGOS_311)
ATGGCGGCGGAACAAAGAAAGCTGCTTGAGCAGCTCATGGGAGGTAAATT
CTCCAAGCCCAGCTTCTACCAAGCTCTAAACAGCTAACCCAATTCTTTTT
CTCCAGCGGACCAGCTCATAGGTACCGGCGCTCCCTCTCGCAATGCGCAG
CTCCAAATCACCGATCCAAAAGTCTGTCGCTCGTATCTCGTCGGCACTTG
TCCGCATGACCTCTTCACCAATACCAAGCAAGACCTGGGCCCTTGTCAGA
AAGTTCACAGCGAAGGATTGAAGACGGAGTATGAGACCGCCTCGGCAGCT
GAGAAGGCCAAATGGGGATTCGATTACGACTATATGCGCGACATGCAGAA
ATACATCGATGATTGTGACCGACGTATCGATACCGCTCAGCGACGCTTGG
AAAAGACTCCGGACGAGATCAGGCAGACCAACAACTTGGTAAGGCATATA
CTCCAGCCCAACCACAGGACACCCCAAGTGGCCAAAAGAAGACTGGACTG
ATCATATTCTCAATAATATAGCTGAAGCAAATCTCCGACCTGACCAAAAC
CATCAACACGGGTCTCCTCGAGATCTCGGTGCTGGGCGAAACCGGCTCCG
TCGCACAGGCCCTGAACGAACTTCACAAGATCCGCACAGCCAAGCACCAA
AAGGAAACGTGTGAGCGAGAACTGAAGAATCTTCAAGATACCTCCGGACC
TTCGGGTCATCAGAAGCTGCAAGTGTGCGATGTCTGCGGCGCGTACCTGA
GTCGTCTCGATAACGATCGTCGGTTGGCGGACCATTTCTTCGGAAAGATG
CACATGGGATACTCGGACATGCGCAAGGGGTATAAGAAGCTCAGCGAGGA
GCTTAAGGGACGGCCTCCGCCGGTTCGTCATCACGATGATGATGATGGTG
GTTGGGGTGGACGCTCCGGTGGTGGACGTGGTCCTCGGTATGGCGGTGGT
GGTTACAAGAAGCGCGGTCCTCGCTGGTAAAACATTGATGAGCGTCTTGT
CTTTTCTTGGAGTTTATTCTGCAATGCTGTTGTAATTTGTCTGGATTTGC
ATAGCGCAGGCGTTTTCGTTACTACTACGTCTGGGATGTTACGGATTAAA
TAAAAATATAATAAACATGTACAGGCCGAGTCTGCTGTTGCTTTCATCCT
TTGTCCCCGCATCCCACTGTGGATCTGTGACAGTAGTACTCAGTAGTAA back to topCoding sequence (CDS) from alignment at NKJJ01000002.1:1705838..1707036- >CAN33_24460-T1 ID=CAN33_24460-T1|Name=CAN33_24460-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2916bp|location=Sequence derived from alignment at NKJJ01000002.1:1705838..1707036- (Aspergillus niger FDAARGOS_311)
TAACTGAAGCAAATCTCCGACCTGACCAAAACCATCAACACGGGTCTCCT
CGAGATCTCGGTGCTGGGCGAAACCGGCTCCGTCGCACAGGCCCTGAACG
AACTTCACAAGATCCGCACAGCCAAGCACCAAAAGGAAACGTGTGAGCGA
GAACTGAAGAATCTTCAAGATACCTCCGGACCTTCGGGTCATCAGAAGCT
GCAAGTGTGCGATGTCTGCGGCGCGTACCTGAGTCGTCTCGATAACGATC
GTCGGTTGGCGGACCATTTCTTCGGAAAGATGCACATGGGATACTCGGAC
ATGCGCAAGGGGTATAAGAAGCTCAGCGAGGAGCTTAAGGGACGGCCTCC
GCCGCGGACCAGCTCATAGGTACCGGCGCTCCCTCTCGCAATGCGCAGCT
CCAAATCACCGATCCAAAAGTCTGTCGCTCGTATCTCGTCGGCACTTGTC
CGCATGACCTCTTCACCAATACCAAGCAAGACCTGGGCCCTTGTCAGAAA
GTTCACAGCGAAGGATTGAAGACGGAGTATGAGACCGCCTCGGCAGCTGA
GAAGGCCAAATGGGGATTCGATTACGACTATATGCGCGACATGCAGAAAT
ACATCGATGATTGTGACCGACGTATCGATACCGCTCAGCGACGCTTGGAA
AAGACTCCGGACGAGATCAGGCAGACCAACAACTTGATGGCGGCGGAACA
AAGAAAGCTGCTTGAGCAGCTCATGGGAGTAACTGAAGCAAATCTCCGAC
CTGACCAAAACCATCAACACGGGTCTCCTCGAGATCTCGGTGCTGGGCGA
AACCGGCTCCGTCGCACAGGCCCTGAACGAACTTCACAAGATCCGCACAG
CCAAGCACCAAAAGGAAACGTGTGAGCGAGAACTGAAGAATCTTCAAGAT
ACCTCCGGACCTTCGGGTCATCAGAAGCTGCAAGTGTGCGATGTCTGCGG
CGCGTACCTGAGTCGTCTCGATAACGATCGTCGGTTGGCGGACCATTTCT
TCGGAAAGATGCACATGGGATACTCGGACATGCGCAAGGGGTATAAGAAG
CTCAGCGAGGAGCTTAAGGGACGGCCTCCGCCGCGGACCAGCTCATAGGT
ACCGGCGCTCCCTCTCGCAATGCGCAGCTCCAAATCACCGATCCAAAAGT
CTGTCGCTCGTATCTCGTCGGCACTTGTCCGCATGACCTCTTCACCAATA
CCAAGCAAGACCTGGGCCCTTGTCAGAAAGTTCACAGCGAAGGATTGAAG
ACGGAGTATGAGACCGCCTCGGCAGCTGAGAAGGCCAAATGGGGATTCGA
TTACGACTATATGCGCGACATGCAGAAATACATCGATGATTGTGACCGAC
GTATCGATACCGCTCAGCGACGCTTGGAAAAGACTCCGGACGAGATCAGG
CAGACCAACAACTTGATGGCGGCGGAACAAAGAAAGCTGCTTGAGCAGCT
CATGGGAGTAACTGAAGCAAATCTCCGACCTGACCAAAACCATCAACACG
GGTCTCCTCGAGATCTCGGTGCTGGGCGAAACCGGCTCCGTCGCACAGGC
CCTGAACGAACTTCACAAGATCCGCACAGCCAAGCACCAAAAGGAAACGT
GTGAGCGAGAACTGAAGAATCTTCAAGATACCTCCGGACCTTCGGGTCAT
CAGAAGCTGCAAGTGTGCGATGTCTGCGGCGCGTACCTGAGTCGTCTCGA
TAACGATCGTCGGTTGGCGGACCATTTCTTCGGAAAGATGCACATGGGAT
ACTCGGACATGCGCAAGGGGTATAAGAAGCTCAGCGAGGAGCTTAAGGGA
CGGCCTCCGCCGCGGACCAGCTCATAGGTACCGGCGCTCCCTCTCGCAAT
GCGCAGCTCCAAATCACCGATCCAAAAGTCTGTCGCTCGTATCTCGTCGG
CACTTGTCCGCATGACCTCTTCACCAATACCAAGCAAGACCTGGGCCCTT
GTCAGAAAGTTCACAGCGAAGGATTGAAGACGGAGTATGAGACCGCCTCG
GCAGCTGAGAAGGCCAAATGGGGATTCGATTACGACTATATGCGCGACAT
GCAGAAATACATCGATGATTGTGACCGACGTATCGATACCGCTCAGCGAC
GCTTGGAAAAGACTCCGGACGAGATCAGGCAGACCAACAACTTGATGGCG
GCGGAACAAAGAAAGCTGCTTGAGCAGCTCATGGGAGTAACTGAAGCAAA
TCTCCGACCTGACCAAAACCATCAACACGGGTCTCCTCGAGATCTCGGTG
CTGGGCGAAACCGGCTCCGTCGCACAGGCCCTGAACGAACTTCACAAGAT
CCGCACAGCCAAGCACCAAAAGGAAACGTGTGAGCGAGAACTGAAGAATC
TTCAAGATACCTCCGGACCTTCGGGTCATCAGAAGCTGCAAGTGTGCGAT
GTCTGCGGCGCGTACCTGAGTCGTCTCGATAACGATCGTCGGTTGGCGGA
CCATTTCTTCGGAAAGATGCACATGGGATACTCGGACATGCGCAAGGGGT
ATAAGAAGCTCAGCGAGGAGCTTAAGGGACGGCCTCCGCCGCGGACCAGC
TCATAGGTACCGGCGCTCCCTCTCGCAATGCGCAGCTCCAAATCACCGAT
CCAAAAGTCTGTCGCTCGTATCTCGTCGGCACTTGTCCGCATGACCTCTT
CACCAATACCAAGCAAGACCTGGGCCCTTGTCAGAAAGTTCACAGCGAAG
GATTGAAGACGGAGTATGAGACCGCCTCGGCAGCTGAGAAGGCCAAATGG
GGATTCGATTACGACTATATGCGCGACATGCAGAAATACATCGATGATTG
TGACCGACGTATCGATACCGCTCAGCGACGCTTGGAAAAGACTCCGGACG
AGATCAGGCAGACCAACAACTTGATGGCGGCGGAACAAAGAAAGCTGCTT
GAGCAGCTCATGGGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005685 | U1 snRNP |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003729 | mRNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006376 | mRNA splice site selection |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | EggNog:ENOG41 |
| Note | BUSCO:EOG09264D7Y |
| DBxref | InterPro:IPR004882 |
| DBxref | PFAM:PF03194 |
| Product | U1 snRNP splicing complex subunit protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000002.1 | supercontig | NKJJ01000002.1:1705838..1707036 - |
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