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CAN33_24485-T1, CAN33_24485-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_24485-T1
Unique NameCAN33_24485-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000002.1:1715402..1716297+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_24485-T1 ID=CAN33_24485-T1|Name=CAN33_24485-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=896bp|location=Sequence derived from alignment at NKJJ01000002.1:1715402..1716297+ (Aspergillus niger FDAARGOS_311)
ATGTCATGTTACTTGTCTCAGAGCTGCTTTAGGCAGCTTGCGCGGAGTCC
TTTGAGACAAGGACCTCTGCCCAACTTCCTCGTCCCCGCTTTCTCTCACC
CTCTTCGGACACAACCTTTCTCGACCACGTCCCCGGTACAATCGCGAGTT
GGCGGCGCCGCGATCACCGTGCCCCCGGAGGTGTCTCTGAAGTTCATCGA
CCTCCCTCAGCCTAAGACCAAGGCCAAGTCGGTTGACTTCCCTAACATGG
CCGTTGAGGTCAAAGGACCCCTGGGTAAGGAACAATGGCAACAATTCATA
GCAGCGGCGTCGGAAAGCGGAGCGAGACTGACATCTGAGTGCTAGGTGAA
TTGTCGCTGAACATCCCTTCCTACGTGAAAATCGACTACGATGAAGCCCT
TCGGAAAGCCACTCTGGCTGTTCAAGACTCAGAGATCACTCACCAGCGTG
CTATGTGGGGTGCGTAACTCCGTTGGAATTAAGTTTACTGTTGAATTATA
GTTGACGGGAGATTGTCTCTAGGAACCATGCGCGCCCACCTACAGAACCA
CATCCTCGGAGTGTCGGAAGGTCACATTTGCATTCTGAGTTTCGTTGGTG
TTGGTTACAGAGCTAGCATCGAACCCACGGCGACCACCGTTGAGCCCCAA
TACCCCGGTCAACAGTTCGTGTCCCTGAAGGTTGGATACTCGCACCCGAT
TGAGCTGGGTATTCCCCAGGGCGTCAAGGCCAGCACACCCCAGCCGACTC
GTATCCTGTTGGAGAGCGTGGACAAGCAGCTTGTGACCAAGTTCGCGGCG
GAGATCCGCGAATGGCGCAAGCCGGAACCTTACAAGGGCAAGGGTATCTT
CGTCAACGGGGAGACGATCAAGCTCAAGGACAAGAAGATTCGGTGA
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Coding sequence (CDS) from alignment at NKJJ01000002.1:1715402..1716297+

>CAN33_24485-T1 ID=CAN33_24485-T1|Name=CAN33_24485-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2286bp|location=Sequence derived from alignment at NKJJ01000002.1:1715402..1716297+ (Aspergillus niger FDAARGOS_311)
ATGTCATGTTACTTGTCTCAGAGCTGCTTTAGGCAGCTTGCGCGGAGTCC
TTTGAGACAAGGACCTCTGCCCAACTTCCTCGTCCCCGCTTTCTCTCACC
CTCTTCGGACACAACCTTTCTCGACCACGTCCCCGGTACAATCGCGAGTT
GGCGGCGCCGCGATCACCGTGCCCCCGGAGGTGTCTCTGAAGTTCATCGA
CCTCCCTCAGCCTAAGACCAAGGCCAAGTCGGTTGACTTCCCTAACATGG
CCGTTGAGGTCAAAGGACCCCTGGGTGAATTGTCGCTGAACATCCCTTCC
TACGTGAAAATCGACTACGATGAAGCCCTTCGGAAAGCCACTCTGGCTGT
TCAAGACTCAGAGATCACTCACCAGCGTGCTATGTGGGGAACCATGCGCG
CCCACCTACAGAACCACATCCTCGGAGTGTCGGAAGGTCACATTTGCATT
CTGAGTTTCGTTGGTGTTGGTTACAGAGCTAGCATCGAACCCACGGCGAC
CACCGTTGAGCCCCAATACCCCGGTCAACAGTTCGTGTCCCTGAAGGTTG
GATACTCGCACCCGATTGAGCTGGGTATTCCCCAGGGCGTCAAGGCCAGC
ACACCCCAGCCGACTCGTATCCTGTTGGAGAGCGTGGACAAGCAGCTTGT
GACCAAGTTCGCGGCGGAGATCCGCGAATGGCGCAAGCCGGAACCTTACA
AGGGCAAGGGTATCTTCGTCAACGGGGAGACGATCAAGCTCAAGGACAAG
AAGATTCGGTGAATGTCATGTTACTTGTCTCAGAGCTGCTTTAGGCAGCT
TGCGCGGAGTCCTTTGAGACAAGGACCTCTGCCCAACTTCCTCGTCCCCG
CTTTCTCTCACCCTCTTCGGACACAACCTTTCTCGACCACGTCCCCGGTA
CAATCGCGAGTTGGCGGCGCCGCGATCACCGTGCCCCCGGAGGTGTCTCT
GAAGTTCATCGACCTCCCTCAGCCTAAGACCAAGGCCAAGTCGGTTGACT
TCCCTAACATGGCCGTTGAGGTCAAAGGACCCCTGGGTGAATTGTCGCTG
AACATCCCTTCCTACGTGAAAATCGACTACGATGAAGCCCTTCGGAAAGC
CACTCTGGCTGTTCAAGACTCAGAGATCACTCACCAGCGTGCTATGTGGG
GAACCATGCGCGCCCACCTACAGAACCACATCCTCGGAGTGTCGGAAGGT
CACATTTGCATTCTGAGTTTCGTTGGTGTTGGTTACAGAGCTAGCATCGA
ACCCACGGCGACCACCGTTGAGCCCCAATACCCCGGTCAACAGTTCGTGT
CCCTGAAGGTTGGATACTCGCACCCGATTGAGCTGGGTATTCCCCAGGGC
GTCAAGGCCAGCACACCCCAGCCGACTCGTATCCTGTTGGAGAGCGTGGA
CAAGCAGCTTGTGACCAAGTTCGCGGCGGAGATCCGCGAATGGCGCAAGC
CGGAACCTTACAAGGGCAAGGGTATCTTCGTCAACGGGGAGACGATCAAG
CTCAAGGACAAGAAGATTCGGTGAATGTCATGTTACTTGTCTCAGAGCTG
CTTTAGGCAGCTTGCGCGGAGTCCTTTGAGACAAGGACCTCTGCCCAACT
TCCTCGTCCCCGCTTTCTCTCACCCTCTTCGGACACAACCTTTCTCGACC
ACGTCCCCGGTACAATCGCGAGTTGGCGGCGCCGCGATCACCGTGCCCCC
GGAGGTGTCTCTGAAGTTCATCGACCTCCCTCAGCCTAAGACCAAGGCCA
AGTCGGTTGACTTCCCTAACATGGCCGTTGAGGTCAAAGGACCCCTGGGT
GAATTGTCGCTGAACATCCCTTCCTACGTGAAAATCGACTACGATGAAGC
CCTTCGGAAAGCCACTCTGGCTGTTCAAGACTCAGAGATCACTCACCAGC
GTGCTATGTGGGGAACCATGCGCGCCCACCTACAGAACCACATCCTCGGA
GTGTCGGAAGGTCACATTTGCATTCTGAGTTTCGTTGGTGTTGGTTACAG
AGCTAGCATCGAACCCACGGCGACCACCGTTGAGCCCCAATACCCCGGTC
AACAGTTCGTGTCCCTGAAGGTTGGATACTCGCACCCGATTGAGCTGGGT
ATTCCCCAGGGCGTCAAGGCCAGCACACCCCAGCCGACTCGTATCCTGTT
GGAGAGCGTGGACAAGCAGCTTGTGACCAAGTTCGCGGCGGAGATCCGCG
AATGGCGCAAGCCGGAACCTTACAAGGGCAAGGGTATCTTCGTCAACGGG
GAGACGATCAAGCTCAAGGACAAGAAGATTCGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_24485CAN33_24485Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_24485-T1.exon1CAN33_24485-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_24485-T1.exon2CAN33_24485-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_24485-T1.exon3CAN33_24485-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_24485-T1.cdsCAN33_24485-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_24485-T1CAN33_24485-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR002358
DBxrefInterPro:IPR020040
DBxrefInterPro:IPR036789
DBxrefInterPro:IPR019906
DBxrefPFAM:PF00347
ProductRibosomal protein L6 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000002.1supercontigNKJJ01000002.1:1715402..1716297 +
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