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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000004.1:1516307..1516859- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_2470-T1 ID=CAN33_2470-T1|Name=CAN33_2470-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=553bp|location=Sequence derived from alignment at NKJJ01000004.1:1516307..1516859- (Aspergillus niger FDAARGOS_311)
ATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTGTACGTCT
ACCACCATACCATTATTATTATCATCATCATATATATACATGTCTCAATG
CGATGGATATGGACATGGTATTTTATATATATTCAATTGCGACAGTACTA
ACAAGCAATTCCTGCTATTATAGAAGGTCCACAAGATCCGTATCACCCTC
ACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTCGGAGCTGATCGA
CCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCGTCCGTCTTCCCA
CCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAACGGTGAGGGTTCC
AAGACCTGGGACAAGTACGAGATGCGCATCCACAAGCGTCTCATCGAGTA
AGCACCCCCCACCTCCTCCTTTGAAGATGTTGGAAGGGAAAGGATGGAAA
GCTAATATCTGTGTTCAGCCTCCTCGCCCCCACCGAGACCGTCAAGCAGA
TCATCATCAACATCGAGGCTGGTGTTGAGGTTGAGGTCACCATTGCTGCT
TAA back to topCoding sequence (CDS) from alignment at NKJJ01000004.1:1516307..1516859- >CAN33_2470-T1 ID=CAN33_2470-T1|Name=CAN33_2470-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1053bp|location=Sequence derived from alignment at NKJJ01000004.1:1516307..1516859- (Aspergillus niger FDAARGOS_311)
CCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAGG
CTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGATC
CGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTC
GGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCG
TCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAAC
GGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGCG
TCTCATCGAATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCC
TCCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAG
GCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGAT
CCGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCT
CGGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCC
GTCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAA
CGGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGC
GTCTCATCGAATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCC
CTCCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGA
GGCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGA
TCCGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGC
TCGGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCC
CGTCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCA
ACGGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAG
CGTCTCATCGAATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGC
CCT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015935 | small ribosomal subunit |
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265CFP |
| DBxref | InterPro:IPR018268 |
| DBxref | InterPro:IPR036838 |
| DBxref | InterPro:IPR005729 |
| DBxref | InterPro:IPR027486 |
| DBxref | InterPro:IPR001848 |
| DBxref | PFAM:PF00338 |
| Product | 40S ribosomal protein S20 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000004.1 | supercontig | NKJJ01000004.1:1516307..1516859 - |
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