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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000002.1:2287915..2288428+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_25430-T1 ID=CAN33_25430-T1|Name=CAN33_25430-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=514bp|location=Sequence derived from alignment at NKJJ01000002.1:2287915..2288428+ (Aspergillus niger FDAARGOS_311)
ATGTCTGCGATTGGAACCCTCGTCTTCTGCACTGACTGCGGCTCCCTGTT
GGATGGCTCAATTGGAGATCCAACTAAGATTCTTGTCTGCGATGTCTGCG
GAGCTAGGAATAAAGGTAGGTTTGCCTTGTTGGTATCCTAGGTTGCAAAG
TTGCATTCACTGACCTTGTCCCCTTTAACTTCCTATTCAGACACCGTTCC
CCAGACTATTGTCTCCGAGTCCAAGCCGAGCGCATTCCCGTCTGCCTTGA
GAGCGAAAAGATCTGCGGTCCAGACCTTGACGGCGTCCGACAGAAGAACC
GAAGCCCTTACCCAACATACTTGCATCAAATGTGGAAGGAAAGAGATGTA
CTACACCACCGTACAACTGCGCAGTGCAGATGAAGGTAGTACGGTGTTTT
ACACGTGTGTCTGTGGTCACAAGTATGCAACCTACAAACCCCTCTCTTTC
CCTGCCTTTTCCGCAATAGCCCATACTAATCTGTCTGTTACACAGGGAAT
CGACGAACAACTAA back to topCoding sequence (CDS) from alignment at NKJJ01000002.1:2287915..2288428+ >CAN33_25430-T1 ID=CAN33_25430-T1|Name=CAN33_25430-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1098bp|location=Sequence derived from alignment at NKJJ01000002.1:2287915..2288428+ (Aspergillus niger FDAARGOS_311)
ATGTCTGCGATTGGAACCCTCGTCTTCTGCACTGACTGCGGCTCCCTGTT
GGATGGCTCAATTGGAGATCCAACTAAGATTCTTGTCTGCGATGTCTGCG
GAGCTAGGAATAAAGACACCGTTCCCCAGACTATTGTCTCCGAGTCCAAG
CCGAGCGCATTCCCGTCTGCCTTGAGAGCGAAAAGATCTGCGGTCCAGAC
CTTGACGGCGTCCGACAGAAGAACCGAAGCCCTTACCCAACATACTTGCA
TCAAATGTGGAAGGAAAGAGATGTACTACACCACCGTACAACTGCGCAGT
GCAGATGAAGGTAGTACGGTGTTTTACACGTGTGTCTGTGGTCACAAGGA
ATCGACGAACAACTAAATGTCTGCGATTGGAACCCTCGTCTTCTGCACTG
ACTGCGGCTCCCTGTTGGATGGCTCAATTGGAGATCCAACTAAGATTCTT
GTCTGCGATGTCTGCGGAGCTAGGAATAAAGACACCGTTCCCCAGACTAT
TGTCTCCGAGTCCAAGCCGAGCGCATTCCCGTCTGCCTTGAGAGCGAAAA
GATCTGCGGTCCAGACCTTGACGGCGTCCGACAGAAGAACCGAAGCCCTT
ACCCAACATACTTGCATCAAATGTGGAAGGAAAGAGATGTACTACACCAC
CGTACAACTGCGCAGTGCAGATGAAGGTAGTACGGTGTTTTACACGTGTG
TCTGTGGTCACAAGGAATCGACGAACAACTAAATGTCTGCGATTGGAACC
CTCGTCTTCTGCACTGACTGCGGCTCCCTGTTGGATGGCTCAATTGGAGA
TCCAACTAAGATTCTTGTCTGCGATGTCTGCGGAGCTAGGAATAAAGACA
CCGTTCCCCAGACTATTGTCTCCGAGTCCAAGCCGAGCGCATTCCCGTCT
GCCTTGAGAGCGAAAAGATCTGCGGTCCAGACCTTGACGGCGTCCGACAG
AAGAACCGAAGCCCTTACCCAACATACTTGCATCAAATGTGGAAGGAAAG
AGATGTACTACACCACCGTACAACTGCGCAGTGCAGATGAAGGTAGTACG
GTGTTTTACACGTGTGTCTGTGGTCACAAGGAATCGACGAACAACTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006379 | mRNA cleavage |
| GO:0006351 | transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR034004 |
| DBxref | InterPro:IPR019761 |
| DBxref | InterPro:IPR012164 |
| DBxref | InterPro:IPR001222 |
| DBxref | PFAM:PF01096 |
| Product | Transcription factor S-II (TFIIS) family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000002.1 | supercontig | NKJJ01000002.1:2287915..2288428 + |
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