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CAN33_25500-T1, CAN33_25500-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_25500-T1
Unique NameCAN33_25500-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000002.1:2322154..2323300-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_25500-T1 ID=CAN33_25500-T1|Name=CAN33_25500-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1147bp|location=Sequence derived from alignment at NKJJ01000002.1:2322154..2323300- (Aspergillus niger FDAARGOS_311)
ATGCCTCGCGGACCGTGAGTAACACGCCCAATGTTGTTCTTACTGCATGC
AGCGAGATTACCGGTGGAATTGCGTTTTCACAGGTCTATCTTCGCTACGG
CAGGAGAATTGAAGATTTTGAGGAGCTGAAAACTAACCACCATGCTCGTA
CAGTAAGAAGCACCAGAAGCGCCTTAGCGCGCCTTCTCACTGGCTCCTGG
ACAAGATGTCCGGAACCTACGCCCCCAAGGCCTCCCCCGGTCCTCACAAG
CTCCGGGACTGCCTGCCCCTGATCGTCTTCATCCGCAACCGGTACGAGCC
ATCCAGCGATTACGAAGGAACCGAAAGAGAGGATCGGAATAGGAGGACTG
ACAGGTTTATAGTCTCAAGTACGCCCTTAACGGCCGTGAGACCAAGGCGA
TCATGATGCAGCGTCTGATCAAGGTCGACGGCAAGGTCCGCACCGACCCT
ACCTACCCCGCTGGTTTCATGGACGTCATCGGCATCGAGAAGACCGGCGA
GAACTTCCGTCTCATCTACGACACCAAGGGTCGCTTCACCGTCCACCGCA
TCCAGGCTGAGGAGGCCGAGTACAAGCTCTGCAAGGTCAAGCGTGTTCAG
CTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGAGAACGTG
AGTGCATACTCTCTACAAGTTCCGCGTCATTCAGTCGTTGGACCAAGCTT
TGGTTGATCGGCGGAGGACGACAGAACTAGAATCGCAGTTCTTTGCTGGA
ACACAGTAAGGAGCCGCAACTTCAGAACAAAGTGTGCTAACAAGGGCTTT
TTTATAGCATCCGTTACCCCGACCCCGCCATCAAGGTCAACGACACCGTG
AAGATCGACATTGCCACTGGCAAGATCGCCGACTTCGTCAAGTTCGACAC
TGGTGTTGTCGCCATGGCCACCGGTGGTCGTAACATGGGTCGTGTCGGTG
TCGTTACCCACCGTGAGCGCCACGATGGTGGTTTCAACATCGTCCACATC
AAGGACGCTATTGACAACACCTTCGCCACCCGTGAGTCCAACGTCTTCGT
CATCGGTCAGGACAAGCCCTGGATCTCCCTGCCCAAGGGCAAGGGTGTCA
AGCTCTCCATCGCTGAGGAGCGTGACCGCCGCCGTGCCCTCCAGTAG
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Coding sequence (CDS) from alignment at NKJJ01000002.1:2322154..2323300-

>CAN33_25500-T1 ID=CAN33_25500-T1|Name=CAN33_25500-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3108bp|location=Sequence derived from alignment at NKJJ01000002.1:2322154..2323300- (Aspergillus niger FDAARGOS_311)
CATCCGTTACCCCGACCCCGCCATCAAGGTCAACGACACCGTGAAGATCG
ACATTGCCACTGGCAAGATCGCCGACTTCGTCAAGTTCGACACTGGTGTT
GTCGCCATGGCCACCGGTGGTCGTAACATGGGTCGTGTCGGTGTCGTTAC
CCACCGTGAGCGCCACGATGGTGGTTTCAACATCGTCCACATCAAGGACG
CTATTGACAACACCTTCGCCACCCGTGAGTCCAACGTCTTCGTCATCGGT
CAGGACAAGCCCTGGATCTCCCTGCCCAAGGGCAAGGGTGTCAAGCTCTC
CATCGCTGAGGAGCGTGACCGCCGCCGTGCCCTCCAGTAGTCTCAAGTAC
GCCCTTAACGGCCGTGAGACCAAGGCGATCATGATGCAGCGTCTGATCAA
GGTCGACGGCAAGGTCCGCACCGACCCTACCTACCCCGCTGGTTTCATGG
ACGTCATCGGCATCGAGAAGACCGGCGAGAACTTCCGTCTCATCTACGAC
ACCAAGGGTCGCTTCACCGTCCACCGCATCCAGGCTGAGGAGGCCGAGTA
CAAGCTCTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCAT
TCTTGGTTACGCACGATGCGAGAACTAAGAAGCACCAGAAGCGCCTTAGC
GCGCCTTCTCACTGGCTCCTGGACAAGATGTCCGGAACCTACGCCCCCAA
GGCCTCCCCCGGTCCTCACAAGCTCCGGGACTGCCTGCCCCTGATCGTCT
TCATCCGCAACCGATGCCTCGCGGACCCATCCGTTACCCCGACCCCGCCA
TCAAGGTCAACGACACCGTGAAGATCGACATTGCCACTGGCAAGATCGCC
GACTTCGTCAAGTTCGACACTGGTGTTGTCGCCATGGCCACCGGTGGTCG
TAACATGGGTCGTGTCGGTGTCGTTACCCACCGTGAGCGCCACGATGGTG
GTTTCAACATCGTCCACATCAAGGACGCTATTGACAACACCTTCGCCACC
CGTGAGTCCAACGTCTTCGTCATCGGTCAGGACAAGCCCTGGATCTCCCT
GCCCAAGGGCAAGGGTGTCAAGCTCTCCATCGCTGAGGAGCGTGACCGCC
GCCGTGCCCTCCAGTAGTCTCAAGTACGCCCTTAACGGCCGTGAGACCAA
GGCGATCATGATGCAGCGTCTGATCAAGGTCGACGGCAAGGTCCGCACCG
ACCCTACCTACCCCGCTGGTTTCATGGACGTCATCGGCATCGAGAAGACC
GGCGAGAACTTCCGTCTCATCTACGACACCAAGGGTCGCTTCACCGTCCA
CCGCATCCAGGCTGAGGAGGCCGAGTACAAGCTCTGCAAGGTCAAGCGTG
TTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGAGA
ACTAAGAAGCACCAGAAGCGCCTTAGCGCGCCTTCTCACTGGCTCCTGGA
CAAGATGTCCGGAACCTACGCCCCCAAGGCCTCCCCCGGTCCTCACAAGC
TCCGGGACTGCCTGCCCCTGATCGTCTTCATCCGCAACCGATGCCTCGCG
GACCCATCCGTTACCCCGACCCCGCCATCAAGGTCAACGACACCGTGAAG
ATCGACATTGCCACTGGCAAGATCGCCGACTTCGTCAAGTTCGACACTGG
TGTTGTCGCCATGGCCACCGGTGGTCGTAACATGGGTCGTGTCGGTGTCG
TTACCCACCGTGAGCGCCACGATGGTGGTTTCAACATCGTCCACATCAAG
GACGCTATTGACAACACCTTCGCCACCCGTGAGTCCAACGTCTTCGTCAT
CGGTCAGGACAAGCCCTGGATCTCCCTGCCCAAGGGCAAGGGTGTCAAGC
TCTCCATCGCTGAGGAGCGTGACCGCCGCCGTGCCCTCCAGTAGTCTCAA
GTACGCCCTTAACGGCCGTGAGACCAAGGCGATCATGATGCAGCGTCTGA
TCAAGGTCGACGGCAAGGTCCGCACCGACCCTACCTACCCCGCTGGTTTC
ATGGACGTCATCGGCATCGAGAAGACCGGCGAGAACTTCCGTCTCATCTA
CGACACCAAGGGTCGCTTCACCGTCCACCGCATCCAGGCTGAGGAGGCCG
AGTACAAGCTCTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATC
CCATTCTTGGTTACGCACGATGCGAGAACTAAGAAGCACCAGAAGCGCCT
TAGCGCGCCTTCTCACTGGCTCCTGGACAAGATGTCCGGAACCTACGCCC
CCAAGGCCTCCCCCGGTCCTCACAAGCTCCGGGACTGCCTGCCCCTGATC
GTCTTCATCCGCAACCGATGCCTCGCGGACCCATCCGTTACCCCGACCCC
GCCATCAAGGTCAACGACACCGTGAAGATCGACATTGCCACTGGCAAGAT
CGCCGACTTCGTCAAGTTCGACACTGGTGTTGTCGCCATGGCCACCGGTG
GTCGTAACATGGGTCGTGTCGGTGTCGTTACCCACCGTGAGCGCCACGAT
GGTGGTTTCAACATCGTCCACATCAAGGACGCTATTGACAACACCTTCGC
CACCCGTGAGTCCAACGTCTTCGTCATCGGTCAGGACAAGCCCTGGATCT
CCCTGCCCAAGGGCAAGGGTGTCAAGCTCTCCATCGCTGAGGAGCGTGAC
CGCCGCCGTGCCCTCCAGTAGTCTCAAGTACGCCCTTAACGGCCGTGAGA
CCAAGGCGATCATGATGCAGCGTCTGATCAAGGTCGACGGCAAGGTCCGC
ACCGACCCTACCTACCCCGCTGGTTTCATGGACGTCATCGGCATCGAGAA
GACCGGCGAGAACTTCCGTCTCATCTACGACACCAAGGGTCGCTTCACCG
TCCACCGCATCCAGGCTGAGGAGGCCGAGTACAAGCTCTGCAAGGTCAAG
CGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGC
GAGAACTAAGAAGCACCAGAAGCGCCTTAGCGCGCCTTCTCACTGGCTCC
TGGACAAGATGTCCGGAACCTACGCCCCCAAGGCCTCCCCCGGTCCTCAC
AAGCTCCGGGACTGCCTGCCCCTGATCGTCTTCATCCGCAACCGATGCCT
CGCGGACC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_25500CAN33_25500Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_25500-T1CAN33_25500-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_25500-T1.cdsCAN33_25500-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_25500-T1.exon4CAN33_25500-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_25500-T1.exon3CAN33_25500-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_25500-T1.exon2CAN33_25500-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_25500-T1.exon1CAN33_25500-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR041982
DBxrefInterPro:IPR018199
DBxrefInterPro:IPR000876
DBxrefInterPro:IPR038237
DBxrefInterPro:IPR014722
DBxrefInterPro:IPR013845
DBxrefInterPro:IPR032277
DBxrefInterPro:IPR013843
DBxrefInterPro:IPR002942
DBxrefPFAM:PF01479
DBxrefPFAM:PF08071
DBxrefPFAM:PF00900
DBxrefPFAM:PF16121
ProductRibosomal family S4e family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000002.1supercontigNKJJ01000002.1:2322154..2323300 -
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