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CAN33_25585-T1, CAN33_25585-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_25585-T1
Unique NameCAN33_25585-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000002.1:2378231..2379401+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_25585-T1 ID=CAN33_25585-T1|Name=CAN33_25585-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1171bp|location=Sequence derived from alignment at NKJJ01000002.1:2378231..2379401+ (Aspergillus niger FDAARGOS_311)
ATGGAGTCAAAGGTGGAGAACGTCGAATCGCATAAGACGGTAGACGGTAG
ATTAATTGGACGGAAAAGCCGTTCGTGCATCCTGGCCTTGCGCTATCAGG
AGCATTGGAACCGAGTCGCAAGTCGTCCGGTGTCTGAATGGCAGGCACAT
GTCACCGGACCGGAAAACGTATGTCATGGCCGTATCTAAGCAGCGTATAT
TGGATTAGCGATAGAAAATGTATTTGTATGAGATTAGCAGTCTGCCGAGT
GGCGACAATGCGTCAACCACCGTAATCGATCTGCCCGTCCGAGTAACAGG
TAAATAGATAGTAGTACAAAGTAAGAAAGGGAGCTCCATCGAAGGACCTT
GGAGCATCTAGCAGCATCTGGCGGCTGATATAAGCAGCCCGTGATTGGTG
GAGAAGGCATCAGCCACAGGGGCCACTGCCGGGCGGTGGCAAAAGTGCTT
GTTCGGGCAGTATTAGCGAGAGGGTTGCAACCCTATGCGCCCCCAAACGG
GCCGCCGTGGGTGACGGCGTCGAGAATTCCCTTCAGCGCTCGCCATCTCC
ACGAGACCACCTTTTTGCTTTCACCCTCAAGCAGGCCATCTCCATCAGCG
CTACATTCAACTCCCTTCGCTGATCGACTTTTTGTCTCGTCAAGATGGTA
CGTTCTACCCCTTCGATGCCATCCCACAACCTGCCCGACATATCTCCCTG
CATGTTTGCATAGAAATGGCTGTCGCCGCTAGCCATCAGTGCACCCCGTC
GTCGCCACCATCCCGTCGCCGCAGGCATCTCGAAATTTTCATCGAAAGGA
AAGGAAGAATGTTGAACTGACGGATATCCCTTCGAAATAGGTTCTCGCGG
TCGACCTCCTCAACCCCGCGCCTCAGGCTGAGGCCCGCAAGCACAAGCTC
AAGGTATGAACAATCCGTATCGGGAAAAAAGTGATAGATAAGAAAGGGAA
GGGAATGGGTTGGCTGATATCGGTTATTACTTCGACAGACCCTTGTGCCT
GCTCCCCGCTCCTTCTTCATGGACGTCAAGTGCCCCGGCTGCTTCACCAT
CACCACCGTCTTCTCCCACGCCCAGACCGTCGTCGTCTGCGCTGGTTGCT
CGACCGTTCTGTGCCAGCCCACCGGTGGTAAGGCCCGTCTCACTGAGGGC
TGCTCTTTCCGCCGCAAGTAA
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Coding sequence (CDS) from alignment at NKJJ01000002.1:2378231..2379401+

>CAN33_25585-T1 ID=CAN33_25585-T1|Name=CAN33_25585-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1242bp|location=Sequence derived from alignment at NKJJ01000002.1:2378231..2379401+ (Aspergillus niger FDAARGOS_311)
ATGGAGTCAAAGGTGGAGAACGTCGAATCGCATAAGACGGTAGACGGTAG
ATTAATTGGACGGAAAAGCCGTTCGTGCATCCTGGCCTTGCGCTATCAGG
AGCATTGGAACCGAGTCGCAAGTCGTCCGGTGTCTGAATGGCAGGCACAT
GTCACCGGACCGGAAAACGTTCTCGCGGTCGACCTCCTCAACCCCGCGCC
TCAGGCTGAGGCCCGCAAGCACAAGCTCAAGACCCTTGTGCCTGCTCCCC
GCTCCTTCTTCATGGACGTCAAGTGCCCCGGCTGCTTCACCATCACCACC
GTCTTCTCCCACGCCCAGACCGTCGTCGTCTGCGCTGGTTGCTCGACCGT
TCTGTGCCAGCCCACCGGTGGTAAGGCCCGTCTCACTGAGGGCTGCTCTT
TCCGCCGCAAGTAAATGGAGTCAAAGGTGGAGAACGTCGAATCGCATAAG
ACGGTAGACGGTAGATTAATTGGACGGAAAAGCCGTTCGTGCATCCTGGC
CTTGCGCTATCAGGAGCATTGGAACCGAGTCGCAAGTCGTCCGGTGTCTG
AATGGCAGGCACATGTCACCGGACCGGAAAACGTTCTCGCGGTCGACCTC
CTCAACCCCGCGCCTCAGGCTGAGGCCCGCAAGCACAAGCTCAAGACCCT
TGTGCCTGCTCCCCGCTCCTTCTTCATGGACGTCAAGTGCCCCGGCTGCT
TCACCATCACCACCGTCTTCTCCCACGCCCAGACCGTCGTCGTCTGCGCT
GGTTGCTCGACCGTTCTGTGCCAGCCCACCGGTGGTAAGGCCCGTCTCAC
TGAGGGCTGCTCTTTCCGCCGCAAGTAAATGGAGTCAAAGGTGGAGAACG
TCGAATCGCATAAGACGGTAGACGGTAGATTAATTGGACGGAAAAGCCGT
TCGTGCATCCTGGCCTTGCGCTATCAGGAGCATTGGAACCGAGTCGCAAG
TCGTCCGGTGTCTGAATGGCAGGCACATGTCACCGGACCGGAAAACGTTC
TCGCGGTCGACCTCCTCAACCCCGCGCCTCAGGCTGAGGCCCGCAAGCAC
AAGCTCAAGACCCTTGTGCCTGCTCCCCGCTCCTTCTTCATGGACGTCAA
GTGCCCCGGCTGCTTCACCATCACCACCGTCTTCTCCCACGCCCAGACCG
TCGTCGTCTGCGCTGGTTGCTCGACCGTTCTGTGCCAGCCCACCGGTGGT
AAGGCCCGTCTCACTGAGGGCTGCTCTTTCCGCCGCAAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_25585CAN33_25585Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_25585-T1.exon1CAN33_25585-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_25585-T1.exon2CAN33_25585-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_25585-T1.exon3CAN33_25585-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_25585-T1.cdsCAN33_25585-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_25585-T1CAN33_25585-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR011332
DBxrefInterPro:IPR000592
DBxrefPFAM:PF01667
ProductRibosomal protein S27 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000002.1supercontigNKJJ01000002.1:2378231..2379401 +
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