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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000002.1:2594242..2595571- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_25960-T1 ID=CAN33_25960-T1|Name=CAN33_25960-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1330bp|location=Sequence derived from alignment at NKJJ01000002.1:2594242..2595571- (Aspergillus niger FDAARGOS_311)
ATGTCGGATCCTATCCAGGTTGCCGGGAAGAGAAAGCGTGCCAGTACGTT
CCCCCAATTGCAATTTAAACCCGCGGTTCGCTCTTCAATCCCTTCTCTGC
TTTTCCTGCGTTTCCCTGCTTTCCCTTCCCCCAAATCTCTCAGCCTTGCT
GTCTCATGTACAGCCGGTGACACCTCGTGCTATTCCCCGCCTGATTTTTC
TTATCGCCAACGCGGGAGATCAACATTCCTTTTTTTTCTCTCTTCTTTCT
TACTTTTTCTTCTTCACGGCTGTCTTTCTTTGTCTCTCGCGATCCCATCA
TCATCCGTTGATGGGTTAATTCCCTGCATCGCTATTCTTTCTACGTTGTT
TGTTAAAATCACAATCACCGTCTTTTTCTATTCTTGTCTCTGTGACACGC
CCTGTCTGTCGCATCACCCAGTGTCCAGCTCCATCTTAGCCTCATCATCC
TCAACCAACCGCGTGGATCTGTCTTTTTTCTGTTATCGCCATTAGAAATG
GTTGCTGACTCGGTTGAACCTGCAGGGACGCAATCCTGCCCTCCCCCGAA
TTGCCCCAGCTCGTTGCGGAACAGCACACTCCCATCCCTGCTCATGACAA
AGAGACCCAGCGTCTGATTGTCGTTCTCTCCCATGCCAGCTTGGAAACCT
ATCGGGCTTCCAGCGGACGCAATGGTTCCGGTCGTGATGAGAAGTACTCC
CTGCTCAACAGCGATGAACACATTGGTGTCATGCGCAAGATGAACCGGGA
TATCAGCGAGGCTCGCCCGGATATCACACATCAGGTTGGTTGCTCTGTCT
GGGATAGCCAACAACGGCTTGGTGGATGGTTGCTAATGATATATGCTTGT
TAGTGCCTGCTCACCCTGCTCGACTCCCCCGTGAACAAGGCGGGTAAGCT
GCAGATCTTCATCCACACTGCCAAGGGTGTCTTGATCGAGGTGAACCCTA
GCGTGCGCATTCCTCGTACCTTCAAGCGATTCGCTGGTTTGATGGTACAG
CTGTTGCACCGCCTCTCCATCCGTTCCACCAACTCCCAGGAGAAGCTCCT
GAAGGTCATCAAGAACCCCATCACCGACCACCTTCCCCCCAACTGCCGCA
AGGTGACCCTCAGTTTCGAAGCCCCCGTGGTGCGCACCCGCGACTACATC
GAATCGCTAGGCCCCAAGGAGAGCGTCTGTATCTTCGTAGGTGCCATGGC
CAAGGGACACGATGACTTTGCCGACTCCTTCAAGGATGACACGATTTCCA
TCAGTAACTACAGCTTGAGTGCCAGTGTCGCATGCAGCAAGTTCTGCCAT
GCCGCCGAGGAGGTGTGGGACATTGTCTGA back to topCoding sequence (CDS) from alignment at NKJJ01000002.1:2594242..2595571- >CAN33_25960-T1 ID=CAN33_25960-T1|Name=CAN33_25960-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2349bp|location=Sequence derived from alignment at NKJJ01000002.1:2594242..2595571- (Aspergillus niger FDAARGOS_311)
TGCCTGCTCACCCTGCTCGACTCCCCCGTGAACAAGGCGGGTAAGCTGCA
GATCTTCATCCACACTGCCAAGGGTGTCTTGATCGAGGTGAACCCTAGCG
TGCGCATTCCTCGTACCTTCAAGCGATTCGCTGGTTTGATGGTACAGCTG
TTGCACCGCCTCTCCATCCGTTCCACCAACTCCCAGGAGAAGCTCCTGAA
GGTCATCAAGAACCCCATCACCGACCACCTTCCCCCCAACTGCCGCAAGG
TGACCCTCAGTTTCGAAGCCCCCGTGGTGCGCACCCGCGACTACATCGAA
TCGCTAGGCCCCAAGGAGAGCGTCTGTATCTTCGTAGGTGCCATGGCCAA
GGGACACGATGACTTTGCCGACTCCTTCAAGGATGACACGATTTCCATCA
GTAACTACAGCTTGAGTGCCAGTGTCGCATGCAGCAAGTTCTGCCATGCC
GCCGAGGAGGTGTGGGACATTGTCTGAGGACGCAATCCTGCCCTCCCCCG
AATTGCCCCAGCTCGTTGCGGAACAGCACACTCCCATCCCTGCTCATGAC
AAAGAGACCCAGCGTCTGATTGTCGTTCTCTCCCATGCCAGCTTGGAAAC
CTATCGGGCTTCCAGCGGACGCAATGGTTCCGGTCGTGATGAGAAGTACT
CCCTGCTCAACAGCGATGAACACATTGGTGTCATGCGCAAGATGAACCGG
GATATCAGCGAGGCTCGCCCGGATATCACACATCAGATGTCGGATCCTAT
CCAGGTTGCCGGGAAGAGAAAGCGTGCCAGTACTGCCTGCTCACCCTGCT
CGACTCCCCCGTGAACAAGGCGGGTAAGCTGCAGATCTTCATCCACACTG
CCAAGGGTGTCTTGATCGAGGTGAACCCTAGCGTGCGCATTCCTCGTACC
TTCAAGCGATTCGCTGGTTTGATGGTACAGCTGTTGCACCGCCTCTCCAT
CCGTTCCACCAACTCCCAGGAGAAGCTCCTGAAGGTCATCAAGAACCCCA
TCACCGACCACCTTCCCCCCAACTGCCGCAAGGTGACCCTCAGTTTCGAA
GCCCCCGTGGTGCGCACCCGCGACTACATCGAATCGCTAGGCCCCAAGGA
GAGCGTCTGTATCTTCGTAGGTGCCATGGCCAAGGGACACGATGACTTTG
CCGACTCCTTCAAGGATGACACGATTTCCATCAGTAACTACAGCTTGAGT
GCCAGTGTCGCATGCAGCAAGTTCTGCCATGCCGCCGAGGAGGTGTGGGA
CATTGTCTGAGGACGCAATCCTGCCCTCCCCCGAATTGCCCCAGCTCGTT
GCGGAACAGCACACTCCCATCCCTGCTCATGACAAAGAGACCCAGCGTCT
GATTGTCGTTCTCTCCCATGCCAGCTTGGAAACCTATCGGGCTTCCAGCG
GACGCAATGGTTCCGGTCGTGATGAGAAGTACTCCCTGCTCAACAGCGAT
GAACACATTGGTGTCATGCGCAAGATGAACCGGGATATCAGCGAGGCTCG
CCCGGATATCACACATCAGATGTCGGATCCTATCCAGGTTGCCGGGAAGA
GAAAGCGTGCCAGTACTGCCTGCTCACCCTGCTCGACTCCCCCGTGAACA
AGGCGGGTAAGCTGCAGATCTTCATCCACACTGCCAAGGGTGTCTTGATC
GAGGTGAACCCTAGCGTGCGCATTCCTCGTACCTTCAAGCGATTCGCTGG
TTTGATGGTACAGCTGTTGCACCGCCTCTCCATCCGTTCCACCAACTCCC
AGGAGAAGCTCCTGAAGGTCATCAAGAACCCCATCACCGACCACCTTCCC
CCCAACTGCCGCAAGGTGACCCTCAGTTTCGAAGCCCCCGTGGTGCGCAC
CCGCGACTACATCGAATCGCTAGGCCCCAAGGAGAGCGTCTGTATCTTCG
TAGGTGCCATGGCCAAGGGACACGATGACTTTGCCGACTCCTTCAAGGAT
GACACGATTTCCATCAGTAACTACAGCTTGAGTGCCAGTGTCGCATGCAG
CAAGTTCTGCCATGCCGCCGAGGAGGTGTGGGACATTGTCTGAGGACGCA
ATCCTGCCCTCCCCCGAATTGCCCCAGCTCGTTGCGGAACAGCACACTCC
CATCCCTGCTCATGACAAAGAGACCCAGCGTCTGATTGTCGTTCTCTCCC
ATGCCAGCTTGGAAACCTATCGGGCTTCCAGCGGACGCAATGGTTCCGGT
CGTGATGAGAAGTACTCCCTGCTCAACAGCGATGAACACATTGGTGTCAT
GCGCAAGATGAACCGGGATATCAGCGAGGCTCGCCCGGATATCACACATC
AGATGTCGGATCCTATCCAGGTTGCCGGGAAGAGAAAGCGTGCCAGTAC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008168 | methyltransferase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263DFA |
| DBxref | InterPro:IPR029028 |
| DBxref | InterPro:IPR029026 |
| DBxref | InterPro:IPR005304 |
| DBxref | PFAM:PF03587 |
| Product | 18S rRNA pseudouridine methyltransferase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000002.1 | supercontig | NKJJ01000002.1:2594242..2595571 - |
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