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CAN33_26045-T1, CAN33_26045-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_26045-T1
Unique NameCAN33_26045-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000002.1:2647564..2648796-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_26045-T1 ID=CAN33_26045-T1|Name=CAN33_26045-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1233bp|location=Sequence derived from alignment at NKJJ01000002.1:2647564..2648796- (Aspergillus niger FDAARGOS_311)
ATGGCCATTACTATTCTCCCTCCGGTTGTGGAGGATGTCGACGTTCCCTA
CTCCGACTCGGAGGACGATGCCATGTCCGTGGATTCAGATGGAGGAGTAG
ATCTCGCAGCGGGAGATGCCACAAGACCTAACAAGCGTCCTCGCTTAGTG
GAAGGAACAAATATTGGCGCAGGAGTCCTCACACCGGGTGAGATCGTAAC
AGATGACCCGCAATGGATGAGGTTGGTTTGGCCCAACTGCTATATTAGCT
CAACGCGCAATTGATTGACACTTGACCGCAGAGGACACGGCACATACACT
AACCCACTATCTACCTCCATCATTGCTACCGTCGCCGGTACAGTTCAGAA
GACCAACAAATTGCTCTCCGTCCAGCCCCTTCGGGCTCGTTATACGCCTG
AGATCGGTGACCTGGTGGTGGGGCGTATTGTCGAGGTGCAGTCTCGGCGA
TGGAAGGTTGACGTCGCTGCTCCCCTTCTCGCACAGCTTCCTCTCTCCGC
TATCAACTTGCCCGGTGGTATCCTGCGTCGACGAACGAGCGCCGATGAAC
TACAAATCCGAACCTTCTTCAGCGAGGGTGACCTCGTCGTTGCTGAAGTC
CAGACGGTACATTCCGACGGAGGCGCATCGTTGCACACCCGGTCGCTGAA
GTATGGTAAATTGAGGAACGGCGTGTTCCTTGCGGTGACGGGGACAGGTG
GCAGTGGTGCGTCTAGCTCGTCAGTCAAAGGTACTTCTGGGGCGAGTGCT
ACGGGCGCGGGAGCCGGAGGTGCAGCGGGTGCTGGTGGAGTGGTTCGGTC
GCGCAGACAGGTCTGGACGATCAATACAGCCAATGGGGGTGGGGATGTAG
ATGTGATTTTGGGAGTTAATGGGTACATTTGGATTTCGAAGCACGCCGAC
GGAGCGGCTGCTGCATCGTCGACGACGGAAAACGTGTCAATCACGCGCAT
GGAGGAGATGGTGTCGAGCTCCATCTACTCGAGTCAGAACGATGATATTC
CGCCACAGACGCGTCGGGAGATCGCCCGGTTGGCGCAGTGCATTCGGGTG
CTTGTCAACGGAGGAGTCCGGGTGGACGAGGAGACGGTGATGGGAGCCTA
TGAAGCCAGCTTACAGGTGGATCTAGAAGTGGGCGATGAGGAAGATGATG
AAGATCGGGGCAAGGAGGGACGAGAATATCTGGAGGGCGACAAGGCTCGC
CGAATTCTAGATTTGGTGCTACAACAACTATAG
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Coding sequence (CDS) from alignment at NKJJ01000002.1:2647564..2648796-

>CAN33_26045-T1 ID=CAN33_26045-T1|Name=CAN33_26045-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2346bp|location=Sequence derived from alignment at NKJJ01000002.1:2647564..2648796- (Aspergillus niger FDAARGOS_311)
AGGACACGGCACATACACTAACCCACTATCTACCTCCATCATTGCTACCG
TCGCCGGTACAGTTCAGAAGACCAACAAATTGCTCTCCGTCCAGCCCCTT
CGGGCTCGTTATACGCCTGAGATCGGTGACCTGGTGGTGGGGCGTATTGT
CGAGGTGCAGTCTCGGCGATGGAAGGTTGACGTCGCTGCTCCCCTTCTCG
CACAGCTTCCTCTCTCCGCTATCAACTTGCCCGGTGGTATCCTGCGTCGA
CGAACGAGCGCCGATGAACTACAAATCCGAACCTTCTTCAGCGAGGGTGA
CCTCGTCGTTGCTGAAGTCCAGACGGTACATTCCGACGGAGGCGCATCGT
TGCACACCCGGTCGCTGAAGTATGGTAAATTGAGGAACGGCGTGTTCCTT
GCGGTGACGGGGACAGGTGGCAGTGGTGCGTCTAGCTCGTCAGTCAAAGG
TACTTCTGGGGCGAGTGCTACGGGCGCGGGAGCCGGAGGTGCAGCGGGTG
CTGGTGGAGTGGTTCGGTCGCGCAGACAGGTCTGGACGATCAATACAGCC
AATGGGGGTGGGGATGTAGATGTGATTTTGGGAGTTAATGGGTACATTTG
GATTTCGAAGCACGCCGACGGAGCGGCTGCTGCATCGTCGACGACGGAAA
ACGTGTCAATCACGCGCATGGAGGAGATGGTGTCGAGCTCCATCTACTCG
AGTCAGAACGATGATATTCCGCCACAGACGCGTCGGGAGATCGCCCGGTT
GGCGCAGTGCATTCGGGTGCTTGTCAACGGAGGAGTCCGGGTGGACGAGG
AGACGGTGATGGGAGCCTATGAAGCCAGCTTACAGGTGGATCTAGAAGTG
GGCGATGAGGAAGATGATGAAGATCGGGGCAAGGAGGGACGAGAATATCT
GGAGGGCGACAAGGCTCGCCGAATTCTAGATTTGGTGCTACAACAACTAT
AGATGGCCATTACTATTCTCCCTCCGGTTGTGGAGGATGTCGACGTTCCC
TACTCCGACTCGGAGGACGATGCCATGTCCGTGGATTCAGATGGAGGAGT
AGATCTCGCAGCGGGAGATGCCACAAGACCTAACAAGCGTCCTCGCTTAG
TGGAAGGAACAAATATTGGCGCAGGAGTCCTCACACCGGGTGAGATCGTA
ACAGATGACCCGCAATGGATGAGAGGACACGGCACATACACTAACCCACT
ATCTACCTCCATCATTGCTACCGTCGCCGGTACAGTTCAGAAGACCAACA
AATTGCTCTCCGTCCAGCCCCTTCGGGCTCGTTATACGCCTGAGATCGGT
GACCTGGTGGTGGGGCGTATTGTCGAGGTGCAGTCTCGGCGATGGAAGGT
TGACGTCGCTGCTCCCCTTCTCGCACAGCTTCCTCTCTCCGCTATCAACT
TGCCCGGTGGTATCCTGCGTCGACGAACGAGCGCCGATGAACTACAAATC
CGAACCTTCTTCAGCGAGGGTGACCTCGTCGTTGCTGAAGTCCAGACGGT
ACATTCCGACGGAGGCGCATCGTTGCACACCCGGTCGCTGAAGTATGGTA
AATTGAGGAACGGCGTGTTCCTTGCGGTGACGGGGACAGGTGGCAGTGGT
GCGTCTAGCTCGTCAGTCAAAGGTACTTCTGGGGCGAGTGCTACGGGCGC
GGGAGCCGGAGGTGCAGCGGGTGCTGGTGGAGTGGTTCGGTCGCGCAGAC
AGGTCTGGACGATCAATACAGCCAATGGGGGTGGGGATGTAGATGTGATT
TTGGGAGTTAATGGGTACATTTGGATTTCGAAGCACGCCGACGGAGCGGC
TGCTGCATCGTCGACGACGGAAAACGTGTCAATCACGCGCATGGAGGAGA
TGGTGTCGAGCTCCATCTACTCGAGTCAGAACGATGATATTCCGCCACAG
ACGCGTCGGGAGATCGCCCGGTTGGCGCAGTGCATTCGGGTGCTTGTCAA
CGGAGGAGTCCGGGTGGACGAGGAGACGGTGATGGGAGCCTATGAAGCCA
GCTTACAGGTGGATCTAGAAGTGGGCGATGAGGAAGATGATGAAGATCGG
GGCAAGGAGGGACGAGAATATCTGGAGGGCGACAAGGCTCGCCGAATTCT
AGATTTGGTGCTACAACAACTATAGATGGCCATTACTATTCTCCCTCCGG
TTGTGGAGGATGTCGACGTTCCCTACTCCGACTCGGAGGACGATGCCATG
TCCGTGGATTCAGATGGAGGAGTAGATCTCGCAGCGGGAGATGCCACAAG
ACCTAACAAGCGTCCTCGCTTAGTGGAAGGAACAAATATTGGCGCAGGAG
TCCTCACACCGGGTGAGATCGTAACAGATGACCCGCAATGGATGAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_26045CAN33_26045Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_26045-T1CAN33_26045-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_26045-T1.cdsCAN33_26045-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_26045-T1.exon2CAN33_26045-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_26045-T1.exon1CAN33_26045-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09263IQ5
DBxrefInterPro:IPR036612
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR025721
DBxrefPFAM:PF14382
ProductExosome complex exonuclease RRP4 N-terminal region family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000002.1supercontigNKJJ01000002.1:2647564..2648796 -
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