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CAN33_26275-T1, CAN33_26275-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_26275-T1
Unique NameCAN33_26275-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000002.1:2792171..2792745-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_26275-T1 ID=CAN33_26275-T1|Name=CAN33_26275-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=575bp|location=Sequence derived from alignment at NKJJ01000002.1:2792171..2792745- (Aspergillus niger FDAARGOS_311)
ATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGGCAGCAAGAACGCCCA
ATCGTATGCCACCCGTTCATCTCGAGCGTCATCTCGAGATATTCGTTAAA
TATACTGACCCGGTCACAGCCGTTCGTCCAAGGCCGGTCTCGCCTTTCCC
GTTGGACGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGCTCAGCGTGT
TGGTGCCGGTTAGTGATACTCGTTTTAACCCAAAAGGCAACTCTAACCTC
ATGATAATAGGTGCTCCCGTTTACCTCGCTGCCGTTCTTGAGTATCTCGC
CGCCGAAATTCTTGAATTGGCTGGCAACGCTGCTCGCGATAACAAGAAGA
CCCGTATCATTCCCCGTCACCTTCAGCTCGCCATCCGCAACGATGAGGAA
CTGAACAAGCTCCTGGGTCATGTCACCATTGCCCAGGGTGGTGTCCTCCC
CAACATCCACCAGAGTAAGTATTGGCTCCATTTGTTAATTCAGCATGTGG
TACTGACAATACATAGACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAA
GGGCCCGGGAAGCCAGGAGCTGTAA
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Coding sequence (CDS) from alignment at NKJJ01000002.1:2792171..2792745-

>CAN33_26275-T1 ID=CAN33_26275-T1|Name=CAN33_26275-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1620bp|location=Sequence derived from alignment at NKJJ01000002.1:2792171..2792745- (Aspergillus niger FDAARGOS_311)
ACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCCCGGGAAGCCAG
GAGCTGTAAGTGCTCCCGTTTACCTCGCTGCCGTTCTTGAGTATCTCGCC
GCCGAAATTCTTGAATTGGCTGGCAACGCTGCTCGCGATAACAAGAAGAC
CCGTATCATTCCCCGTCACCTTCAGCTCGCCATCCGCAACGATGAGGAAC
TGAACAAGCTCCTGGGTCATGTCACCATTGCCCAGGGTGGTGTCCTCCCC
AACATCCACCAGACCGTTCGTCCAAGGCCGGTCTCGCCTTTCCCGTTGGA
CGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGCTCAGCGTGTTGGTGC
CGATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGGCAGCAAGAACGCC
CAATCACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCCCGGGAA
GCCAGGAGCTGTAAGTGCTCCCGTTTACCTCGCTGCCGTTCTTGAGTATC
TCGCCGCCGAAATTCTTGAATTGGCTGGCAACGCTGCTCGCGATAACAAG
AAGACCCGTATCATTCCCCGTCACCTTCAGCTCGCCATCCGCAACGATGA
GGAACTGAACAAGCTCCTGGGTCATGTCACCATTGCCCAGGGTGGTGTCC
TCCCCAACATCCACCAGACCGTTCGTCCAAGGCCGGTCTCGCCTTTCCCG
TTGGACGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGCTCAGCGTGTT
GGTGCCGATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGGCAGCAAGA
ACGCCCAATCACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCCC
GGGAAGCCAGGAGCTGTAAGTGCTCCCGTTTACCTCGCTGCCGTTCTTGA
GTATCTCGCCGCCGAAATTCTTGAATTGGCTGGCAACGCTGCTCGCGATA
ACAAGAAGACCCGTATCATTCCCCGTCACCTTCAGCTCGCCATCCGCAAC
GATGAGGAACTGAACAAGCTCCTGGGTCATGTCACCATTGCCCAGGGTGG
TGTCCTCCCCAACATCCACCAGACCGTTCGTCCAAGGCCGGTCTCGCCTT
TCCCGTTGGACGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGCTCAGC
GTGTTGGTGCCGATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGGCAG
CAAGAACGCCCAATCACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAG
GGCCCGGGAAGCCAGGAGCTGTAAGTGCTCCCGTTTACCTCGCTGCCGTT
CTTGAGTATCTCGCCGCCGAAATTCTTGAATTGGCTGGCAACGCTGCTCG
CGATAACAAGAAGACCCGTATCATTCCCCGTCACCTTCAGCTCGCCATCC
GCAACGATGAGGAACTGAACAAGCTCCTGGGTCATGTCACCATTGCCCAG
GGTGGTGTCCTCCCCAACATCCACCAGACCGTTCGTCCAAGGCCGGTCTC
GCCTTTCCCGTTGGACGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGC
TCAGCGTGTTGGTGCCGATGACTGGAGGCAAATCTGGAGGCAAGGCCAGC
GGCAGCAAGAACGCCCAATC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_26275CAN33_26275Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_26275-T1CAN33_26275-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_26275-T1.cdsCAN33_26275-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_26275-T1.exon4CAN33_26275-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_26275-T1.exon3CAN33_26275-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_26275-T1.exon2CAN33_26275-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_26275-T1.exon1CAN33_26275-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR032458
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR007125
DBxrefInterPro:IPR032454
DBxrefInterPro:IPR002119
DBxrefPFAM:PF16211
DBxrefPFAM:PF00125
DBxrefPFAM:PF00808
ProductCore histone H2A/H2B/H3/H4 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000002.1supercontigNKJJ01000002.1:2792171..2792745 -
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