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CAN33_26830-T1, CAN33_26830-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_26830-T1
Unique NameCAN33_26830-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000002.1:3279050..3279902+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_26830-T1 ID=CAN33_26830-T1|Name=CAN33_26830-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=853bp|location=Sequence derived from alignment at NKJJ01000002.1:3279050..3279902+ (Aspergillus niger FDAARGOS_311)
ATGGAGCAGATCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGATTGT
GGACTTCTTCCTCCCCAAGCTGAAGGATGAGGTCATGAAGGTACGAACCG
ATCGCCCGATTACCGAATTGTCGACAAGGAAGATCTACGATTGTGCGCGG
GAAATAGGATTGAATGCGCGGGTGGAATTGATACGTGGATCGGAATTGCA
GACATGATGGGATCAAAAAGGATATATCGAAAAAAAAAAATGGGAGGTGC
TGACGGCTGGAAAATTTAGATCAAACCCGTCCAGAAGCAGACCCGTGCCG
GTCAGCGTACCCGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGT
CACATCGGTCTCGGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCG
TGCTGCCATCACCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTT
ACTGGGGTACCAACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGC
GCCAAGTGTGGTTCCGTCTCCGTCAGAGTATGTCGCGACTCTTTCGATCC
TCGATTTCGCTTTTCCGTCCGGCCAATATGCTAACCCGGTTATAGCTTAT
CCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCCCCGCTGTCAAGCGTC
TGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACCTGCTCTTCCGGTTCC
ACCAAGACCCTCGAGAACACTCTCAAGGCTACTTTCCTTGCCGTCGTCAA
CACCTACGGCTTCCTCACCCCCAACCTCTGGAAGGAGACTAAGCTCATCC
GCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGTCAGGGCAAGAAGTAC
TAG
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Coding sequence (CDS) from alignment at NKJJ01000002.1:3279050..3279902+

>CAN33_26830-T1 ID=CAN33_26830-T1|Name=CAN33_26830-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1818bp|location=Sequence derived from alignment at NKJJ01000002.1:3279050..3279902+ (Aspergillus niger FDAARGOS_311)
ATGGAGCAGATCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGATTGT
GGACTTCTTCCTCCCCAAGCTGAAGGATGAGGTCATGAAGATCAAACCCG
TCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCCGTCGTC
GTCATCGGTGACTCCGAGGGTCACATCGGTCTCGGTATCAAGACCTCCAA
GGAAGTCGCTACCGCTATCCGTGCTGCCATCACCATCGCCAAGCTCAGCG
TTCTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTTGGTGAGCCTCAC
TCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGTCTCCGTCAGACT
TATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCCCCGCTGTCAAGC
GTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACCTGCTCTTCCGGT
TCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTTCCTTGCCGTCGT
CAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGGAGACTAAGCTCA
TCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGTCAGGGCAAGAAG
TACTAGATGGAGCAGATCTACCTGCACTCCCTGCCCGTGAAGGAGTACCA
GATTGTGGACTTCTTCCTCCCCAAGCTGAAGGATGAGGTCATGAAGATCA
AACCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCC
GTCGTCGTCATCGGTGACTCCGAGGGTCACATCGGTCTCGGTATCAAGAC
CTCCAAGGAAGTCGCTACCGCTATCCGTGCTGCCATCACCATCGCCAAGC
TCAGCGTTCTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTTGGTGAG
CCTCACTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGTCTCCGT
CAGACTTATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCCCCGCTG
TCAAGCGTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACCTGCTCT
TCCGGTTCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTTCCTTGC
CGTCGTCAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGGAGACTA
AGCTCATCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGTCAGGGC
AAGAAGTACTAGATGGAGCAGATCTACCTGCACTCCCTGCCCGTGAAGGA
GTACCAGATTGTGGACTTCTTCCTCCCCAAGCTGAAGGATGAGGTCATGA
AGATCAAACCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTC
AAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTCACATCGGTCTCGGTAT
CAAGACCTCCAAGGAAGTCGCTACCGCTATCCGTGCTGCCATCACCATCG
CCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTT
GGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGT
CTCCGTCAGACTTATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCC
CCGCTGTCAAGCGTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACC
TGCTCTTCCGGTTCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTT
CCTTGCCGTCGTCAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGG
AGACTAAGCTCATCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGT
CAGGGCAAGAAGTACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS2CAN33_26830Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_26830-T1.exon1CAN33_26830-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_26830-T1.exon2CAN33_26830-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_26830-T1.exon3CAN33_26830-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_26830-T1.cdsCAN33_26830-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_26830-T1CAN33_26830-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR020568
DBxrefInterPro:IPR018192
DBxrefInterPro:IPR005711
DBxrefInterPro:IPR014721
DBxrefInterPro:IPR005324
DBxrefInterPro:IPR013810
DBxrefPFAM:PF03719
DBxrefPFAM:PF00333
Product40S ribosomal protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000002.1supercontigNKJJ01000002.1:3279050..3279902 +
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