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CAN33_2800-T1, CAN33_2800-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_2800-T1
Unique NameCAN33_2800-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000004.1:1733511..1734123+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_2800-T1 ID=CAN33_2800-T1|Name=CAN33_2800-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=613bp|location=Sequence derived from alignment at NKJJ01000004.1:1733511..1734123+ (Aspergillus niger FDAARGOS_311)
ATGTCTACAGAAATGGAAGTCGACCCTCCCGTGGCGCAGGAGGAGGAGGT
CCCCGCGCAGTCGGGCAACAATACCTCTGATCCGAGAACGCAAGCGTCAG
CTGTTGCAGTGCGCAGTATCGAAGGATGGATCATCATCGCGACCAATATT
CATGAAGAGGCCTCTGAGGAGGACGTGACGGATCTGTTTGCTGAATATGG
AGAGATCAAGAACTTCAATTTGAACCTCGATCGCCGGACGGGTTATGTGA
AGGTAGGTGTCTTTAGCTCTTCATCAACGTGGGAATTCATTCTATGATTT
TGCTGGATATATTTCCATGCTCAATCTTGATAAAGTATACTGCTACTGAG
CATAAGATGAGATACTAAGTGGCTTTTGTCAGGGTTACGCGTTGATCGAA
TACTCCACCCTCCCCGAAGCCTCGGAAGCCATCAAGGCTTTGAACGGATC
CAAATTGCTGGACCAGACAATCCAGGTCGACTTCGCGTTTGTCCGGCCAC
CCCCATCAAACAAAGGAAAGAACGCTGGACAAAGAGGTGGCCGTGGTGGA
CGGGGACGCAGCAGGAGCCGGGATAGGAGTCGCAGCCCTGGAGCGGAGGA
GGCTAGAGACTAG
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Coding sequence (CDS) from alignment at NKJJ01000004.1:1733511..1734123+

>CAN33_2800-T1 ID=CAN33_2800-T1|Name=CAN33_2800-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=966bp|location=Sequence derived from alignment at NKJJ01000004.1:1733511..1734123+ (Aspergillus niger FDAARGOS_311)
ATGTCTACAGAAATGGAAGTCGACCCTCCCGTGGCGCAGGAGGAGGAGGT
CCCCGCGCAGTCGGGCAACAATACCTCTGATCCGAGAACGCAAGCGTCAG
CTGTTGCAGTGCGCAGTATCGAAGGATGGATCATCATCGCGACCAATATT
CATGAAGAGGCCTCTGAGGAGGACGTGACGGATCTGTTTGCTGAATATGG
AGAGATCAAGAACTTCAATTTGAACCTCGATCGCCGGACGGGTTATGTGA
AGGGTTACGCGTTGATCGAATACTCCACCCTCCCCGAAGCCTCGGAAGCC
ATCAAGGCTTTGAACGGATCCAAATTGCTGGACCAGACAATCCAGGTCGA
CTTCGCGTTTGTCCGGCCACCCCCATCAAACAAAGGAAAGAACGCTGGAC
AAAGAGGTGGCCGTGGTGGACGGGGACGCAGCAGGAGCCGGGATAGGAGT
CGCAGCCCTGGAGCGGAGGAGGCTAGAGACTAGATGTCTACAGAAATGGA
AGTCGACCCTCCCGTGGCGCAGGAGGAGGAGGTCCCCGCGCAGTCGGGCA
ACAATACCTCTGATCCGAGAACGCAAGCGTCAGCTGTTGCAGTGCGCAGT
ATCGAAGGATGGATCATCATCGCGACCAATATTCATGAAGAGGCCTCTGA
GGAGGACGTGACGGATCTGTTTGCTGAATATGGAGAGATCAAGAACTTCA
ATTTGAACCTCGATCGCCGGACGGGTTATGTGAAGGGTTACGCGTTGATC
GAATACTCCACCCTCCCCGAAGCCTCGGAAGCCATCAAGGCTTTGAACGG
ATCCAAATTGCTGGACCAGACAATCCAGGTCGACTTCGCGTTTGTCCGGC
CACCCCCATCAAACAAAGGAAAGAACGCTGGACAAAGAGGTGGCCGTGGT
GGACGGGGACGCAGCAGGAGCCGGGATAGGAGTCGCAGCCCTGGAGCGGA
GGAGGCTAGAGACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003729mRNA binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_2800CAN33_2800Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_2800-T1.exon1CAN33_2800-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_2800-T1.exon2CAN33_2800-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_2800-T1.cdsCAN33_2800-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_2800-T1CAN33_2800-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR033744
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000504
DBxrefInterPro:IPR008111
DBxrefPFAM:PF00076
ProductRNA recognition motif family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000004.1supercontigNKJJ01000004.1:1733511..1734123 +
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