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CAN33_28195-T1, CAN33_28195-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_28195-T1
Unique NameCAN33_28195-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000002.1:4080559..4081816-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_28195-T1 ID=CAN33_28195-T1|Name=CAN33_28195-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1258bp|location=Sequence derived from alignment at NKJJ01000002.1:4080559..4081816- (Aspergillus niger FDAARGOS_311)
ATGGTTACGGAAGCGCCTGACGTCAATTTGGTTGAAAAGAGGGCGACTAC
TTGCACCTTCTCGGGCTCCGAAGGTGCATCCAAGGCCAGCAAGTCGAAAA
CCTCTTGCTCCACAATCTACCTGTCCGACGTGGCCGTCCCATCTGGCACA
ACCCTTGATCTCTCTGACCTGAATGATGGAACCCACGTACGTTCCCCGGG
TGATTCATGTCTTATTCTCACACCCAATCGCGTCAATAGTACTGGCTGAC
AGATGTACTAGGTGATCTTCCAGGGAGAAACCACTTTTGGATACGAGGAA
TGGGAAGGGCCTCTTGTGCGTGTTTCTGGAACTGATATCACGGTCGAGGG
GGAGAGCGACGCGGTGCTCAATGGCGATGGCAGCCGCTGGTGGGATGGAG
AGGGTGGCAATGGTGGTAAAACAAAGCCCAAGTTCTTCTATGCCCATGAC
TTGACCTCTTCCACCATCAAGAGCATCTACATCGAGAACTCTCCTGTGCA
GGTGTTCAGCATCGATGGCTCCACTGATCTTACCATGACTGATATCACGG
TGGATAACACGGATGGTGACACGGACGACCTCGCCGCCAATACGGATGGC
TTCGACATCGGGGAAAGCACCTATATCACGATCACAGGTGCCGAAATCTA
CAACCAAGATGACTGCGTTGCCATCAATTCTGGAGAGGTATGCGTCCCCT
GGCACTGATTGAGAGGAGAGGCGCCTTGCTGACGATCTGGTAGAACATTT
ATTTCAGTGCCAGTGTGTGTTCTGGTGGTCACGGCCTGTCTATTGGCTCT
GTTGGTGGTCGGGATGATAACACTGTCAAGAACGTGACGTTTTATGATGT
CAATGTTCTCAAGTCCCAGCAAGGTAAGGGAAAGCATTTGAACCATCCGT
TTGCCGTCCTCTAACGTATGCTTTAGCAATCCGTATCAAGACCATCTACG
GCGACACTGGCTCCGTCAGCGAAGTCACTTACCATGAGATTGCCTTTTCG
GACGCTACTGATTACGGCATTGTCATTGAGCAGAACTATGATGACACCTC
CAAGACCCCTACTACCGGGGTACCGATCACGGATTTTGTGCTCGAGAACA
TCGTTGGAACGTGTGAAGATGATGATTGTACCGAAGTATACATTGCCTGC
GGTGATGGCAGCTGCTCGGATTGGACTTGGACTGGCGTGAGCGTGACTGG
CGGCAGTGTCAGTGACGACTGCCTTAATGTTCCCTCCGGGATTAGCTGCG
ATTTGTAG
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Coding sequence (CDS) from alignment at NKJJ01000002.1:4080559..4081816-

>CAN33_28195-T1 ID=CAN33_28195-T1|Name=CAN33_28195-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4296bp|location=Sequence derived from alignment at NKJJ01000002.1:4080559..4081816- (Aspergillus niger FDAARGOS_311)
CAATCCGTATCAAGACCATCTACGGCGACACTGGCTCCGTCAGCGAAGTC
ACTTACCATGAGATTGCCTTTTCGGACGCTACTGATTACGGCATTGTCAT
TGAGCAGAACTATGATGACACCTCCAAGACCCCTACTACCGGGGTACCGA
TCACGGATTTTGTGCTCGAGAACATCGTTGGAACGTGTGAAGATGATGAT
TGTACCGAAGTATACATTGCCTGCGGTGATGGCAGCTGCTCGGATTGGAC
TTGGACTGGCGTGAGCGTGACTGGCGGCAGTGTCAGTGACGACTGCCTTA
ATGTTCCCTCCGGGATTAGCTGCGATTTGTAGAACATTTATTTCAGTGCC
AGTGTGTGTTCTGGTGGTCACGGCCTGTCTATTGGCTCTGTTGGTGGTCG
GGATGATAACACTGTCAAGAACGTGACGTTTTATGATGTCAATGTTCTCA
AGTCCCAGCAAGGTGATCTTCCAGGGAGAAACCACTTTTGGATACGAGGA
ATGGGAAGGGCCTCTTGTGCGTGTTTCTGGAACTGATATCACGGTCGAGG
GGGAGAGCGACGCGGTGCTCAATGGCGATGGCAGCCGCTGGTGGGATGGA
GAGGGTGGCAATGGTGGTAAAACAAAGCCCAAGTTCTTCTATGCCCATGA
CTTGACCTCTTCCACCATCAAGAGCATCTACATCGAGAACTCTCCTGTGC
AGGTGTTCAGCATCGATGGCTCCACTGATCTTACCATGACTGATATCACG
GTGGATAACACGGATGGTGACACGGACGACCTCGCCGCCAATACGGATGG
CTTCGACATCGGGGAAAGCACCTATATCACGATCACAGGTGCCGAAATCT
ACAACCAAGATGACTGCGTTGCCATCAATTCTGGAGAGATGGTTACGGAA
GCGCCTGACGTCAATTTGGTTGAAAAGAGGGCGACTACTTGCACCTTCTC
GGGCTCCGAAGGTGCATCCAAGGCCAGCAAGTCGAAAACCTCTTGCTCCA
CAATCTACCTGTCCGACGTGGCCGTCCCATCTGGCACAACCCTTGATCTC
TCTGACCTGAATGATGGAACCCACCAATCCGTATCAAGACCATCTACGGC
GACACTGGCTCCGTCAGCGAAGTCACTTACCATGAGATTGCCTTTTCGGA
CGCTACTGATTACGGCATTGTCATTGAGCAGAACTATGATGACACCTCCA
AGACCCCTACTACCGGGGTACCGATCACGGATTTTGTGCTCGAGAACATC
GTTGGAACGTGTGAAGATGATGATTGTACCGAAGTATACATTGCCTGCGG
TGATGGCAGCTGCTCGGATTGGACTTGGACTGGCGTGAGCGTGACTGGCG
GCAGTGTCAGTGACGACTGCCTTAATGTTCCCTCCGGGATTAGCTGCGAT
TTGTAGAACATTTATTTCAGTGCCAGTGTGTGTTCTGGTGGTCACGGCCT
GTCTATTGGCTCTGTTGGTGGTCGGGATGATAACACTGTCAAGAACGTGA
CGTTTTATGATGTCAATGTTCTCAAGTCCCAGCAAGGTGATCTTCCAGGG
AGAAACCACTTTTGGATACGAGGAATGGGAAGGGCCTCTTGTGCGTGTTT
CTGGAACTGATATCACGGTCGAGGGGGAGAGCGACGCGGTGCTCAATGGC
GATGGCAGCCGCTGGTGGGATGGAGAGGGTGGCAATGGTGGTAAAACAAA
GCCCAAGTTCTTCTATGCCCATGACTTGACCTCTTCCACCATCAAGAGCA
TCTACATCGAGAACTCTCCTGTGCAGGTGTTCAGCATCGATGGCTCCACT
GATCTTACCATGACTGATATCACGGTGGATAACACGGATGGTGACACGGA
CGACCTCGCCGCCAATACGGATGGCTTCGACATCGGGGAAAGCACCTATA
TCACGATCACAGGTGCCGAAATCTACAACCAAGATGACTGCGTTGCCATC
AATTCTGGAGAGATGGTTACGGAAGCGCCTGACGTCAATTTGGTTGAAAA
GAGGGCGACTACTTGCACCTTCTCGGGCTCCGAAGGTGCATCCAAGGCCA
GCAAGTCGAAAACCTCTTGCTCCACAATCTACCTGTCCGACGTGGCCGTC
CCATCTGGCACAACCCTTGATCTCTCTGACCTGAATGATGGAACCCACCA
ATCCGTATCAAGACCATCTACGGCGACACTGGCTCCGTCAGCGAAGTCAC
TTACCATGAGATTGCCTTTTCGGACGCTACTGATTACGGCATTGTCATTG
AGCAGAACTATGATGACACCTCCAAGACCCCTACTACCGGGGTACCGATC
ACGGATTTTGTGCTCGAGAACATCGTTGGAACGTGTGAAGATGATGATTG
TACCGAAGTATACATTGCCTGCGGTGATGGCAGCTGCTCGGATTGGACTT
GGACTGGCGTGAGCGTGACTGGCGGCAGTGTCAGTGACGACTGCCTTAAT
GTTCCCTCCGGGATTAGCTGCGATTTGTAGAACATTTATTTCAGTGCCAG
TGTGTGTTCTGGTGGTCACGGCCTGTCTATTGGCTCTGTTGGTGGTCGGG
ATGATAACACTGTCAAGAACGTGACGTTTTATGATGTCAATGTTCTCAAG
TCCCAGCAAGGTGATCTTCCAGGGAGAAACCACTTTTGGATACGAGGAAT
GGGAAGGGCCTCTTGTGCGTGTTTCTGGAACTGATATCACGGTCGAGGGG
GAGAGCGACGCGGTGCTCAATGGCGATGGCAGCCGCTGGTGGGATGGAGA
GGGTGGCAATGGTGGTAAAACAAAGCCCAAGTTCTTCTATGCCCATGACT
TGACCTCTTCCACCATCAAGAGCATCTACATCGAGAACTCTCCTGTGCAG
GTGTTCAGCATCGATGGCTCCACTGATCTTACCATGACTGATATCACGGT
GGATAACACGGATGGTGACACGGACGACCTCGCCGCCAATACGGATGGCT
TCGACATCGGGGAAAGCACCTATATCACGATCACAGGTGCCGAAATCTAC
AACCAAGATGACTGCGTTGCCATCAATTCTGGAGAGATGGTTACGGAAGC
GCCTGACGTCAATTTGGTTGAAAAGAGGGCGACTACTTGCACCTTCTCGG
GCTCCGAAGGTGCATCCAAGGCCAGCAAGTCGAAAACCTCTTGCTCCACA
ATCTACCTGTCCGACGTGGCCGTCCCATCTGGCACAACCCTTGATCTCTC
TGACCTGAATGATGGAACCCACCAATCCGTATCAAGACCATCTACGGCGA
CACTGGCTCCGTCAGCGAAGTCACTTACCATGAGATTGCCTTTTCGGACG
CTACTGATTACGGCATTGTCATTGAGCAGAACTATGATGACACCTCCAAG
ACCCCTACTACCGGGGTACCGATCACGGATTTTGTGCTCGAGAACATCGT
TGGAACGTGTGAAGATGATGATTGTACCGAAGTATACATTGCCTGCGGTG
ATGGCAGCTGCTCGGATTGGACTTGGACTGGCGTGAGCGTGACTGGCGGC
AGTGTCAGTGACGACTGCCTTAATGTTCCCTCCGGGATTAGCTGCGATTT
GTAGAACATTTATTTCAGTGCCAGTGTGTGTTCTGGTGGTCACGGCCTGT
CTATTGGCTCTGTTGGTGGTCGGGATGATAACACTGTCAAGAACGTGACG
TTTTATGATGTCAATGTTCTCAAGTCCCAGCAAGGTGATCTTCCAGGGAG
AAACCACTTTTGGATACGAGGAATGGGAAGGGCCTCTTGTGCGTGTTTCT
GGAACTGATATCACGGTCGAGGGGGAGAGCGACGCGGTGCTCAATGGCGA
TGGCAGCCGCTGGTGGGATGGAGAGGGTGGCAATGGTGGTAAAACAAAGC
CCAAGTTCTTCTATGCCCATGACTTGACCTCTTCCACCATCAAGAGCATC
TACATCGAGAACTCTCCTGTGCAGGTGTTCAGCATCGATGGCTCCACTGA
TCTTACCATGACTGATATCACGGTGGATAACACGGATGGTGACACGGACG
ACCTCGCCGCCAATACGGATGGCTTCGACATCGGGGAAAGCACCTATATC
ACGATCACAGGTGCCGAAATCTACAACCAAGATGACTGCGTTGCCATCAA
TTCTGGAGAGATGGTTACGGAAGCGCCTGACGTCAATTTGGTTGAAAAGA
GGGCGACTACTTGCACCTTCTCGGGCTCCGAAGGTGCATCCAAGGCCAGC
AAGTCGAAAACCTCTTGCTCCACAATCTACCTGTCCGACGTGGCCGTCCC
ATCTGGCACAACCCTTGATCTCTCTGACCTGAATGATGGAACCCAC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_28195CAN33_28195Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_28195-T1CAN33_28195-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_28195-T1.cdsCAN33_28195-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_28195-T1.exon4CAN33_28195-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_28195-T1.exon3CAN33_28195-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_28195-T1.exon2CAN33_28195-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_28195-T1.exon1CAN33_28195-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
ProductGlycosyl hydrolases family 28 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000002.1supercontigNKJJ01000002.1:4080559..4081816 -
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