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CAN33_29250-T1, CAN33_29250-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_29250-T1
Unique NameCAN33_29250-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000008.1:654093..655149+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_29250-T1 ID=CAN33_29250-T1|Name=CAN33_29250-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1057bp|location=Sequence derived from alignment at NKJJ01000008.1:654093..655149+ (Aspergillus niger FDAARGOS_311)
ATGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGC
AACCACGTCCATCTCCATTGTATGTCTTCAATTCGTCCTCGTGCGGTGGT
TAGGATCCGCTGCTAATCACCTTTTCTTCGTTTAGTTGGCTTGGTTGATC
GCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATATCCCACCTA
TTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGGCATGGCGC
TTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGGTATGTTAC
CATCCCTCCTGAATCAATCTTTTGACAACCCTTCGTACTGATTTATGGCA
GATCGTGGGGTATCTTTCCGCTGGTCTTGTTATCACAACAATCTCCATCA
ACACGTTAGTCTATGCAAACAGCGCCGCATCGCAGGCTGCCGGTGCTGGG
TTCATTCTTTTGGCTATGGTTATTGTAAGTGATAACCAGCTCCGACACAC
ATACCCACTAGGCAGTACGTGACTTACCATTAATGCAGATCATTTGGATT
TTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGGCTTCATCGATTC
ATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAAATGGCAGACCTA
TGTCAACTGCATTCGGCAATCGACCCGAGACGACATCCAGCCAGCCCCCG
CAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGACCTCTTCGCCCGT
GTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACACCGCAGCTCCTCGC
AGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCCCAACAATGGCGCA
CCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACCGTGCGAAGGCGAT
CTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAGATCAGTTTCACCA
AGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGATGGTGGCAGGCC
AGGAAGGCCACCGGAGAGACCGGTATTGCTCCATCCAACTACCTGATCTT
GCTGTGA
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Coding sequence (CDS) from alignment at NKJJ01000008.1:654093..655149+

>CAN33_29250-T1 ID=CAN33_29250-T1|Name=CAN33_29250-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3468bp|location=Sequence derived from alignment at NKJJ01000008.1:654093..655149+ (Aspergillus niger FDAARGOS_311)
ATGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGC
AACCACGTCCATCTCCATTTTGGCTTGGTTGATCGCATTTATCTCCTCCA
TTGTCACTGGCGTACATGGCGGATATCCCACCTATTCATGGTGGGCTGTT
GCTTACTCATTTTGCTGCATTGTCGGCATGGCGCTTGTCTTCGGCACCGA
TACTGGTGCCGTCTATAACATAGCGATCGTGGGGTATCTTTCCGCTGGTC
TTGTTATCACAACAATCTCCATCAACACGTTAGTCTATGCAAACAGCGCC
GCATCGCAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCTATGGTTATTAT
CATTTGGATTTTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGGCT
TCATCGATTCATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAAAT
GGCAGACCTATGTCAACTGCATTCGGCAATCGACCCGAGACGACATCCAG
CCAGCCCCCGCAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGACCT
CTTCGCCCGTGTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACACCGC
AGCTCCTCGCAGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCCCAA
CAATGGCGCACCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACCGTG
CGAAGGCGATCTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAGATC
AGTTTCACCAAGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGATG
GTGGCAGGCCAGGAAGGCCACCGGAGAGACCGGTATTGCTCCATCCAACT
ACCTGATCTTGCTGTGAATGGCGCGCTTCAGAGCCAGCAATATTCTGGGC
GACCCCTTTGCGCTCGCAACCACGTCCATCTCCATTTTGGCTTGGTTGAT
CGCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATATCCCACCT
ATTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGGCATGGCG
CTTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGATCGTGGG
GTATCTTTCCGCTGGTCTTGTTATCACAACAATCTCCATCAACACGTTAG
TCTATGCAAACAGCGCCGCATCGCAGGCTGCCGGTGCTGGGTTCATTCTT
TTGGCTATGGTTATTATCATTTGGATTTTCTACTTCGGATCTAGCCCTCA
GGCTTCGCATCGCGGCTTCATCGATTCATTTGCCCTCCAGAAGGAAGGTG
CTGGCTCGTACGGAAATGGCAGACCTATGTCAACTGCATTCGGCAATCGA
CCCGAGACGACATCCAGCCAGCCCCCGCAGATGTACACGTCCGCTCAACT
CAACGGCTTCGAGACCTCTTCGCCCGTGTCGGGTTATCCCGGAGGAGCCC
CCGGCTCCGAACACCGCAGCTCCTCGCAGCCCCGCTTCGGCAACCCGTCC
GCTACGAATCTGCCCAACAATGGCGCACCAGATGAAGTCCCCCAGCCCAC
GGAATATCCGTACCGTGCGAAGGCGATCTATTCGTATGAGGCCAACCCTG
AAGATGCCAATGAGATCAGTTTCACCAAGCATGAGATCTTGGAGGTGTCC
GATGTGAGCGGTAGATGGTGGCAGGCCAGGAAGGCCACCGGAGAGACCGG
TATTGCTCCATCCAACTACCTGATCTTGCTGTGAATGGCGCGCTTCAGAG
CCAGCAATATTCTGGGCGACCCCTTTGCGCTCGCAACCACGTCCATCTCC
ATTTTGGCTTGGTTGATCGCATTTATCTCCTCCATTGTCACTGGCGTACA
TGGCGGATATCCCACCTATTCATGGTGGGCTGTTGCTTACTCATTTTGCT
GCATTGTCGGCATGGCGCTTGTCTTCGGCACCGATACTGGTGCCGTCTAT
AACATAGCGATCGTGGGGTATCTTTCCGCTGGTCTTGTTATCACAACAAT
CTCCATCAACACGTTAGTCTATGCAAACAGCGCCGCATCGCAGGCTGCCG
GTGCTGGGTTCATTCTTTTGGCTATGGTTATTATCATTTGGATTTTCTAC
TTCGGATCTAGCCCTCAGGCTTCGCATCGCGGCTTCATCGATTCATTTGC
CCTCCAGAAGGAAGGTGCTGGCTCGTACGGAAATGGCAGACCTATGTCAA
CTGCATTCGGCAATCGACCCGAGACGACATCCAGCCAGCCCCCGCAGATG
TACACGTCCGCTCAACTCAACGGCTTCGAGACCTCTTCGCCCGTGTCGGG
TTATCCCGGAGGAGCCCCCGGCTCCGAACACCGCAGCTCCTCGCAGCCCC
GCTTCGGCAACCCGTCCGCTACGAATCTGCCCAACAATGGCGCACCAGAT
GAAGTCCCCCAGCCCACGGAATATCCGTACCGTGCGAAGGCGATCTATTC
GTATGAGGCCAACCCTGAAGATGCCAATGAGATCAGTTTCACCAAGCATG
AGATCTTGGAGGTGTCCGATGTGAGCGGTAGATGGTGGCAGGCCAGGAAG
GCCACCGGAGAGACCGGTATTGCTCCATCCAACTACCTGATCTTGCTGTG
AATGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCG
CAACCACGTCCATCTCCATTTTGGCTTGGTTGATCGCATTTATCTCCTCC
ATTGTCACTGGCGTACATGGCGGATATCCCACCTATTCATGGTGGGCTGT
TGCTTACTCATTTTGCTGCATTGTCGGCATGGCGCTTGTCTTCGGCACCG
ATACTGGTGCCGTCTATAACATAGCGATCGTGGGGTATCTTTCCGCTGGT
CTTGTTATCACAACAATCTCCATCAACACGTTAGTCTATGCAAACAGCGC
CGCATCGCAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCTATGGTTATTA
TCATTTGGATTTTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGGC
TTCATCGATTCATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAAA
TGGCAGACCTATGTCAACTGCATTCGGCAATCGACCCGAGACGACATCCA
GCCAGCCCCCGCAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGACC
TCTTCGCCCGTGTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACACCG
CAGCTCCTCGCAGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCCCA
ACAATGGCGCACCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACCGT
GCGAAGGCGATCTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAGAT
CAGTTTCACCAAGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGAT
GGTGGCAGGCCAGGAAGGCCACCGGAGAGACCGGTATTGCTCCATCCAAC
TACCTGATCTTGCTGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SHO1CAN33_29250Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29250-T1.exon1CAN33_29250-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_29250-T1.exon2CAN33_29250-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_29250-T1.exon3CAN33_29250-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_29250-T1.exon4CAN33_29250-T1.exon4Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29250-T1.cdsCAN33_29250-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29250-T1CAN33_29250-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036028
DBxrefInterPro:IPR035522
DBxrefInterPro:IPR001452
DBxrefPFAM:PF07653
DBxrefPFAM:PF00018
ProductTransmembrane osmosensor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000008.1supercontigNKJJ01000008.1:654093..655149 +
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