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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000008.1:859902..861416- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_29530-T1 ID=CAN33_29530-T1|Name=CAN33_29530-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1515bp|location=Sequence derived from alignment at NKJJ01000008.1:859902..861416- (Aspergillus niger FDAARGOS_311)
ATGGCCGCCGCTGTCGCCAACGGCCATACCACTTCCTCCGCCGATGTCGC
CAAACAGCGCAGGCTGATCCACCACCATGCCGATGTCGTGATTGTAGGCG
CCGGGATCCTAGGTTGTGCATTGGCGGTCGCACTTGGAAGACAAGGGCGC
AGCGTCCTGCTGCTGGAGGCGTCCATGAAGGAGCCTGACCGGATCGTGGG
AGAGTTACTACAGCCTGGCGGTGTCGAGGCGCTTGAGAAACTGGGTCTTG
CTGATTGTCTCGAAGACATTGATGCCATCCCAGCGAAAGGCTACCATGTG
ACATACTTTGGGAAACCCGTCTCGTTCACCTACCCCAAAGCCTCCCCGTC
GTCGCCCGCCCCGCAAGGGTGTTGTTTCCACCATGGCCGCTTCGTCATGA
AGCTGCGAGCTGCTGCGCTGGCCTGCCCCAATGTCACAGTGGTGGAGACC
AAGGCCACCGACTTGGTCACTTGCTCCCACACCAAGCAGGTTCTTGGTGT
CGAGTGTGTGACCGGCGACATGAAGGATTGCTACTTTGGCCATCTTACGG
TGGTGGCCGATGGCTACGCCTCCAAACTCCGCAAGCAATACCATTCCAAT
ACTCCCAAGGTCCGCTCCAGGTTCTGGGGCTTGGAATTGATCGATGCAGA
CCTTCCCAAGCCTTATCATGGCCACGTCCTCCTTAGCGACAATGCCCCTA
TCCTCGTCTACCAAATTGGCACCCATGAAACCCGCATCCTCATCGACATC
CCAGAGAACCTCCCGTCGGCCTCCGTCAAGAACGGCGGCGTCAAGAACCA
CCTTCGCAACGTCGTTCTCCCGTCCCTTCCCGAATGCATTCAGCCTTCAT
TCGTGGCTGCGTTGGACAAAGGTCAGCTGCGGTCAATGCCGAACTCATAT
CTGCCTAGTACCCCGAACAAGACTCCCGGTCTGGTCATCCTGGGCGATGC
GCTCAACATGCGGCATCCGCTGACCGGTGGAGGAATGACCGTCGCATTCA
ACGACGTTGTGGTCCTTCGTGATCTGCTGAGTCCGGAGAAGGTCCCTTCC
CTCGCTAATCATGAGCGCGTCCTGCAACAGCTGTCCTCCTTCCGTTGGCA
ACGGAAGAAAACATGTTCAGTCATCAACATTTTGGCGCAGGCTCTCTATG
CCTTGTTTGCTGCTAAAGGTTCGTTTTACATTGTTTCCCATCCGTCACAC
CCAGCGTCCCAGCAGCTAACGCCAGACCCCACTGGGGCAAATCTAGACGA
GAATATGCGTGCTCTCCAACGGGGCTGCTTCCGTTACTTTGAGTTAGGAA
TGACCAGCGGGCCCATAGGCCTTCTGGGTGGACTGATCAAAAAGCCGGAC
GTTCTATTCTGGCATTTCTTCAGTGTCGCCTTTCTCTCTCTGTGGCTCGT
CATCACCGAGCCACCTTTCTACAAGCTGCCTCTGGCTTTGTTGAAATGCA
TTATGGTCTTTTGGACAGCATGCGTCGTGATCTTCCCCTACATGCTGATA
GAGGCATTCTGCTAA back to topCoding sequence (CDS) from alignment at NKJJ01000008.1:859902..861416- >CAN33_29530-T1 ID=CAN33_29530-T1|Name=CAN33_29530-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1515bp|location=Sequence derived from alignment at NKJJ01000008.1:859902..861416- (Aspergillus niger FDAARGOS_311)
ATGGCCGCCGCTGTCGCCAACGGCCATACCACTTCCTCCGCCGATGTCGC
CAAACAGCGCAGGCTGATCCACCACCATGCCGATGTCGTGATTGTAGGCG
CCGGGATCCTAGGTTGTGCATTGGCGGTCGCACTTGGAAGACAAGGGCGC
AGCGTCCTGCTGCTGGAGGCGTCCATGAAGGAGCCTGACCGGATCGTGGG
AGAGTTACTACAGCCTGGCGGTGTCGAGGCGCTTGAGAAACTGGGTCTTG
CTGATTGTCTCGAAGACATTGATGCCATCCCAGCGAAAGGCTACCATGTG
ACATACTTTGGGAAACCCGTCTCGTTCACCTACCCCAAAGCCTCCCCGTC
GTCGCCCGCCCCGCAAGGGTGTTGTTTCCACCATGGCCGCTTCGTCATGA
AGCTGCGAGCTGCTGCGCTGGCCTGCCCCAATGTCACAGTGGTGGAGACC
AAGGCCACCGACTTGGTCACTTGCTCCCACACCAAGCAGGTTCTTGGTGT
CGAGTGTGTGACCGGCGACATGAAGGATTGCTACTTTGGCCATCTTACGG
TGGTGGCCGATGGCTACGCCTCCAAACTCCGCAAGCAATACCATTCCAAT
ACTCCCAAGGTCCGCTCCAGGTTCTGGGGCTTGGAATTGATCGATGCAGA
CCTTCCCAAGCCTTATCATGGCCACGTCCTCCTTAGCGACAATGCCCCTA
TCCTCGTCTACCAAATTGGCACCCATGAAACCCGCATCCTCATCGACATC
CCAGAGAACCTCCCGTCGGCCTCCGTCAAGAACGGCGGCGTCAAGAACCA
CCTTCGCAACGTCGTTCTCCCGTCCCTTCCCGAATGCATTCAGCCTTCAT
TCGTGGCTGCGTTGGACAAAGGTCAGCTGCGGTCAATGCCGAACTCATAT
CTGCCTAGTACCCCGAACAAGACTCCCGGTCTGGTCATCCTGGGCGATGC
GCTCAACATGCGGCATCCGCTGACCGGTGGAGGAATGACCGTCGCATTCA
ACGACGTTGTGGTCCTTCGTGATCTGCTGAGTCCGGAGAAGGTCCCTTCC
CTCGCTAATCATGAGCGCGTCCTGCAACAGCTGTCCTCCTTCCGTTGGCA
ACGGAAGAAAACATGTTCAGTCATCAACATTTTGGCGCAGGCTCTCTATG
CCTTGTTTGCTGCTAAAGGTTCGTTTTACATTGTTTCCCATCCGTCACAC
CCAGCGTCCCAGCAGCTAACGCCAGACCCCACTGGGGCAAATCTAGACGA
GAATATGCGTGCTCTCCAACGGGGCTGCTTCCGTTACTTTGAGTTAGGAA
TGACCAGCGGGCCCATAGGCCTTCTGGGTGGACTGATCAAAAAGCCGGAC
GTTCTATTCTGGCATTTCTTCAGTGTCGCCTTTCTCTCTCTGTGGCTCGT
CATCACCGAGCCACCTTTCTACAAGCTGCCTCTGGCTTTGTTGAAATGCA
TTATGGTCTTTTGGACAGCATGCGTCGTGATCTTCCCCTACATGCTGATA
GAGGCATTCTGCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004506 | squalene monooxygenase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09261M4S |
| DBxref | InterPro:IPR013698 |
| DBxref | InterPro:IPR036188 |
| DBxref | PFAM:PF08491 |
| DBxref | PFAM:PF01494 |
| Product | Squalene epoxidase family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000008.1 | supercontig | NKJJ01000008.1:859902..861416 - |
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